/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/280 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/281 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/282 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/283 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/284 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/285 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/286 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/287 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/288 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/289 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/290 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/291 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/292 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/293 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/294 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/295 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/296 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/297 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/298 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/299 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/300 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/301 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/302 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/303 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/304 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/305 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/306 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/307 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/308 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/309 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/310 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/311 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/312 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/313 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/314 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/315 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/316 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/317 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/318 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/319 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/320 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/321 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/322 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/323 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/324 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/325 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/326 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/327 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/328 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/329 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/330 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/331 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/332 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/333 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/334 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/335 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/336 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/337 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/338 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/339 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/340 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/341 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/342 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/343 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/344 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/345 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/346 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/347 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/348 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/349 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/350 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/351 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/352 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/353 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/354 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/355 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/356 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/357 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/358 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/359 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/360 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/361 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/362 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/363 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/364 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/365 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/366 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/367 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/368 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/369 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/370 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/371 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/372 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/373 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/374 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/375 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/376 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/377 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/378 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/379 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/380 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/381 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/382 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/383 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/384 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/385 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/386 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/387 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/388 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/389 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/390 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/391 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/392 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/393 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/394 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/395 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/396 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/397 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/398 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/399 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/400 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/401 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/402 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/403 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/404 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/405 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/406 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/407 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/408 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/409 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/410 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/411 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/280 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/281 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/282 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/283 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/284 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/285 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/286 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/287 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/288 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/289 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/290 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/291 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/292 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/293 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/294 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/295 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/296 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/280 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/281 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/282 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/283 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/284 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/285 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/286 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/287 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/288 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/289 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/290 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/291 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/280 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/281 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/282 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/283 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/284 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/285 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/286 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/287 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/288 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/289 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/290 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/291 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/292 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/293 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/294 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/295 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/296 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/297 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/298 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/299 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/300 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/301 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/302 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/303 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/304 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/305 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/306 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/307 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/308 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/309 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/310 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/311 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/312 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/313 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/314 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/315 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/316 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/317 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/318 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/319 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/320 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/321 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/322 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/323 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/324 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/325 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/326 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/327 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/328 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/329 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/330 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/331 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/332 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/333 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/334 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/335 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/336 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/337 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/338 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/339 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/340 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/341 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/342 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/343 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/344 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/345 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/346 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/347 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/348 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/349 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/350 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/351 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/352 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/280 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/281 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/282 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/283 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/284 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/285 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/286 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/287 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/288 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/289 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/290 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/291 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/292 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/293 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/294 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/295 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/296 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/297 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/298 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/299 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/300 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/301 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/302 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/303 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/304 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/305 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/306 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/307 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/308 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/309 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/310 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/311 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/312 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/313 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/314 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/315 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/316 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/317 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/318 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/319 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/320 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/321 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/322 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/323 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/324 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/325 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/326 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/327 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/328 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/329 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/330 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/331 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/332 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/333 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/334 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/335 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/336 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/337 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/338 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/339 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/340 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/341 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/342 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/343 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/344 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/345 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/346 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/347 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/348 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/349 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/350 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/351 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/352 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/353 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/354 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/355 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/356 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/357 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/358 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/359 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/360 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/361 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/362 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/363 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/364 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/365 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/366 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/367 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/368 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/369 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/370 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/371 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none