/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/280 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/281 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/282 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/283 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/284 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/285 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/286 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/287 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/288 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/289 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/290 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/291 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/292 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/293 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/294 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/295 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/296 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/297 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/298 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/299 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/300 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/301 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/302 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/303 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/304 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/305 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/306 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/307 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/308 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/309 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/310 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/311 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/312 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/313 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/314 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/315 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/316 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/317 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/318 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/319 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/320 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/321 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/322 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/323 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/324 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/325 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/326 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/327 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/328 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/329 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/330 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/331 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/332 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/333 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/334 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/335 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/336 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/337 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/338 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/339 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/340 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/341 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/342 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/343 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/344 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/345 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/346 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/347 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/348 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/349 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/350 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/351 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/352 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/353 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/354 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/355 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/356 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/357 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/358 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/359 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/360 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/361 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/362 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/363 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/364 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/365 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/366 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/367 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/368 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/369 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/370 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/371 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/372 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/373 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/374 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/375 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/376 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/377 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/378 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/379 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/380 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/381 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/382 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/383 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/384 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/385 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/386 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/387 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/388 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/389 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/390 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/391 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/392 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/393 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/394 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/395 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/396 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/397 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/398 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/399 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/400 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/401 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/402 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/403 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/404 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/405 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/406 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/407 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/408 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/409 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/410 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/411 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/280 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/281 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/282 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/283 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/284 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/285 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/286 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/287 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/288 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/289 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/290 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/291 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/292 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/293 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/294 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/295 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/296 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/280 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/281 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/282 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/283 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/284 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/285 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/286 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/287 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/288 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/289 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/290 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/291 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/280 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/281 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/282 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/283 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/284 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/285 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/286 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/287 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/288 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/289 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/290 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/291 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/292 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/293 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/294 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/295 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/296 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/297 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/298 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/299 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/300 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/301 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/302 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/303 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/304 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/305 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/306 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/307 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/308 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/309 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/310 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/311 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/312 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/313 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/314 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/315 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/316 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/317 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/318 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/319 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/320 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/321 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/322 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/323 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/324 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/325 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/326 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/327 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/328 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/329 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/330 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/331 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/332 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/333 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/334 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/335 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/336 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/337 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/338 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/339 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/340 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/341 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/342 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/343 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/344 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/345 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/346 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/347 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/348 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/349 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/350 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/351 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/352 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/280 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/281 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/282 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/283 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/284 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/285 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/286 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/287 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/288 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/289 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/290 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/291 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/292 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/293 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/294 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/295 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/296 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/297 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/298 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/299 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/300 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/301 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/302 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/303 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/304 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/305 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/306 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/307 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/308 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/309 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/310 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/311 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/312 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/313 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/314 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/315 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/316 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/317 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/318 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/319 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/320 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/321 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/322 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/323 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/324 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/325 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/326 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/327 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/328 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/329 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/330 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/331 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/332 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/333 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/334 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/335 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/336 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/337 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/338 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/339 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/340 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/341 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/342 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/343 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/344 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/345 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/346 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/347 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/348 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/349 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/350 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/351 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/352 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/353 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/354 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/355 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/356 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/357 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/358 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/359 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/360 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/361 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/362 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/363 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/364 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/365 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/366 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/367 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/368 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/369 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/370 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/371 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none