/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_0 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_0-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1000 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1000-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1001 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1001-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1002 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1002-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1003 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1003-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1004 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1004-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1005 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1005-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1006 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1006-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1007 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1007-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1008 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1008-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1009 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1009-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_100 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_100-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1010 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1010-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1011 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1011-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1012 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1012-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1013 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1013-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1014 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1014-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1015 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1015-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1016 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1016-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1017 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1017-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1018 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1018-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1019 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1019-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_101 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_101-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1020 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1020-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1021 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1021-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1022 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1022-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1023 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1023-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1024 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1024-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1025 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1025-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1026 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1026-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1027 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1027-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1028 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1028-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1029 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1029-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_102 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_102-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1030 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1030-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1031 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1031-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1032 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1032-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1033 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1033-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1034 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1034-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1035 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1035-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1036 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1036-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1037 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1037-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1038 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1038-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1039 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1039-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_103 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_103-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1040 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1040-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1041 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1041-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1042 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1042-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1043 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1043-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1044 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1044-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1045 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1045-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1046 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1046-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1047 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1047-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1048 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1048-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1049 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1049-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_104 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_104-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1050 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1050-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1051 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1051-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1052 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1052-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1053 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1053-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1054 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1054-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1055 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1055-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1056 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1056-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1057 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1057-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1058 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1058-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1059 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1059-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_105 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_105-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1060 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1060-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1061 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1061-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1062 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1062-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1063 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1063-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1064 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1064-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1065 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1065-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1066 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1066-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1067 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1067-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1068 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1068-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1069 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1069-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_106 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_106-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1070 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1070-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1071 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1071-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1072 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1072-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1073 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1073-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1074 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1074-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1075 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1075-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1076 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1076-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1077 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1077-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1078 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1078-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1079 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1079-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_107 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_107-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1080 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1080-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1081 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1081-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1082 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1082-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1083 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1083-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1084 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1084-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1085 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1085-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1086 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1086-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1087 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1087-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1088 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1088-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1089 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1089-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_108 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_108-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1090 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1090-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1091 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1091-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1092 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1092-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1093 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1093-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1094 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1094-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1095 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1095-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1096 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1096-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1097 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1097-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1098 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1098-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1099 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1099-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_109 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_109-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_10 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_10-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1100 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1100-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1101 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1101-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1102 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1102-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1103 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1103-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1104 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1104-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1105 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1105-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1106 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1106-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1107 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1107-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1108 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1108-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1109 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1109-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_110 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_110-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1110 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1110-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1111 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1111-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1112 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1112-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1113 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1113-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1114 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1114-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1115 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1115-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1116 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1116-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1117 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1117-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1118 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1118-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1119 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1119-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_111 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_111-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1120 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1120-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1121 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1121-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1122 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1122-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1123 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1123-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1124 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1124-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1125 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1125-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1126 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1126-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1127 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1127-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1128 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1128-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1129 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1129-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_112 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_112-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1130 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1130-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1131 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1131-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1132 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1132-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1133 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1133-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1134 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1134-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1135 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1135-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1136 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1136-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1137 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1137-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1138 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1138-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1139 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1139-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_113 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_113-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1140 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1140-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1141 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1141-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1142 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1142-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1143 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1143-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1144 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1144-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1145 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1145-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1146 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1146-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1147 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1147-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1148 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1148-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1149 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1149-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_114 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_114-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1150 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1150-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1151 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1151-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1152 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1152-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1153 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1153-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1154 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1154-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1155 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1155-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1156 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1156-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1157 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1157-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1158 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1158-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1159 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1159-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_115 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_115-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1160 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1160-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1161 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1161-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1162 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1162-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1163 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1163-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1164 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1164-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1165 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1165-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1166 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1166-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1167 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1167-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1168 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1168-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1169 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1169-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_116 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_116-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1170 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1170-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1171 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1171-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1172 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1172-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1173 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1173-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1174 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1174-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1175 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1175-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1176 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1176-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1177 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1177-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1178 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1178-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1179 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1179-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_117 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_117-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1180 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1180-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1181 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1181-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1182 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1182-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1183 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1183-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1184 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1184-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1185 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1185-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1186 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1186-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1187 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1187-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1188 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1188-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1189 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1189-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_118 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_118-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1190 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1190-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1191 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1191-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1192 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1192-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1193 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1193-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1194 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1194-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1195 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1195-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1196 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1196-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1197 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1197-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1198 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1198-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1199 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1199-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_119 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_119-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_11 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_11-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1200 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1200-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1201 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1201-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1202 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1202-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1203 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1203-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1204 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1204-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1205 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1205-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1206 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1206-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1207 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1207-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1208 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1208-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1209 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1209-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_120 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_120-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1210 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1210-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1211 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1211-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1212 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1212-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1213 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1213-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1214 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1214-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1215 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1215-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1216 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1216-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1217 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1217-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1218 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1218-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1219 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1219-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_121 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_121-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1220 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1220-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1221 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1221-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1222 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1222-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1223 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1223-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1224 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1224-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1225 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1225-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1226 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1226-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1227 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1227-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1228 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1228-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1229 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1229-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_122 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_122-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1230 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1230-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1231 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1231-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1232 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1232-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1233 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1233-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1234 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1234-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1235 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1235-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1236 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1236-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1237 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1237-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1238 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1238-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1239 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1239-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_123 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_123-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1240 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1240-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1241 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1241-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1242 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1242-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1243 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1243-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1244 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1244-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1245 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1245-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1246 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1246-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1247 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1247-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1248 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1248-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1249 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1249-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_124 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_124-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1250 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1250-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1251 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1251-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1252 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1252-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1253 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1253-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1254 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1254-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1255 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1255-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1256 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1256-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1257 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1257-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1258 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1258-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1259 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1259-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_125 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_125-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1260 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1260-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1261 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1261-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1262 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1262-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1263 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1263-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1264 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1264-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1265 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1265-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1266 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1266-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1267 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1267-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1268 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1268-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1269 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1269-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_126 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_126-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1270 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1270-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1271 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1271-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1272 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1272-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1273 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1273-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1274 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1274-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1275 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1275-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1276 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1276-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1277 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1277-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1278 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1278-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1279 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1279-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_127 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_127-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1280 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1280-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1281 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1281-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1282 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1282-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1283 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1283-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1284 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1284-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1285 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1285-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1286 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1286-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1287 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1287-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1288 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1288-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1289 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1289-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_128 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_128-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1290 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1290-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1291 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1291-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1292 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1292-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1293 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1293-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1294 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1294-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1295 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1295-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1296 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1296-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1297 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1297-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1298 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1298-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1299 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1299-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_129 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_129-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_12 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_12-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1300 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1300-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1301 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1301-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1302 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1302-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1303 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1303-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1304 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1304-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1305 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1305-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1306 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1306-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1307 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1307-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1308 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1308-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1309 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1309-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_130 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_130-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1310 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1310-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1311 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1311-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1312 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1312-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1313 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1313-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1314 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1314-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1315 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1315-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1316 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1316-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1317 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1317-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1318 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1318-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1319 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1319-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_131 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_131-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1320 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1320-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1321 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1321-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1322 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1322-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1323 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1323-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1324 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1324-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1325 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1325-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1326 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1326-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1327 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1327-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1328 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1328-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1329 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1329-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_132 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_132-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1330 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1330-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1331 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1331-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1332 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1332-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1333 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1333-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1334 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1334-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1335 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1335-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1336 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1336-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1337 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1337-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1338 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1338-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1339 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1339-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_133 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_133-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1340 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1340-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1341 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1341-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1342 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1342-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1343 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1343-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1344 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1344-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1345 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1345-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1346 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1346-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1347 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1347-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1348 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1348-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1349 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1349-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_134 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_134-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1350 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1350-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1351 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1351-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1352 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1352-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1353 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1353-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1354 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1354-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1355 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1355-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1356 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1356-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1357 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1357-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1358 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1358-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1359 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1359-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_135 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_135-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1360 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1360-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1361 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1361-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1362 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1362-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1363 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1363-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1364 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1364-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1365 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1365-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1366 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1366-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1367 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1367-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1368 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1368-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1369 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1369-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_136 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_136-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1370 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1370-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1371 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1371-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1372 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1372-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1373 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1373-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1374 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1374-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1375 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1375-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1376 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1376-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1377 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1377-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1378 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1378-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1379 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1379-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_137 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_137-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1380 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1380-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1381 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1381-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1382 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1382-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1383 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1383-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1384 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1384-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1385 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1385-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1386 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1386-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1387 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1387-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1388 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1388-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1389 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1389-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_138 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_138-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1390 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1390-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1391 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1391-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1392 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1392-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1393 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1393-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1394 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1394-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1395 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1395-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1396 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1396-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1397 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1397-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1398 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1398-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1399 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1399-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_139 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_139-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_13 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_13-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1400 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1400-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1401 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1401-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1402 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1402-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1403 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1403-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1404 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1404-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1405 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1405-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1406 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1406-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1407 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1407-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1408 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1408-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1409 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1409-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_140 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_140-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1410 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1410-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1411 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1411-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1412 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1412-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1413 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1413-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1414 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1414-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1415 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1415-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1416 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1416-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1417 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1417-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1418 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1418-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1419 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1419-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_141 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_141-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1420 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1420-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1421 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1421-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1422 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1422-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1423 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1423-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1424 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1424-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1425 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1425-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1426 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1426-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1427 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1427-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1428 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1428-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1429 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1429-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_142 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_142-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1430 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1430-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1431 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1431-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1432 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1432-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1433 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1433-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1434 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1434-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1435 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1435-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1436 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1436-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1437 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1437-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1438 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1438-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1439 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1439-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_143 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_143-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1440 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1440-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1441 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1441-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1442 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1442-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1443 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1443-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1444 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1444-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1445 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1445-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1446 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1446-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1447 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1447-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1448 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1448-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1449 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1449-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_144 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_144-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1450 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1450-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1451 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1451-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1452 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1452-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1453 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1453-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1454 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1454-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1455 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1455-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1456 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1456-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1457 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1457-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1458 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1458-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1459 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1459-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_145 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_145-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1460 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1460-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1461 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1461-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1462 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1462-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1463 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1463-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1464 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1464-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1465 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1465-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1466 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1466-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1467 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1467-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1468 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1468-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1469 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1469-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_146 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_146-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1470 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1470-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1471 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1471-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1472 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1472-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1473 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1473-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1474 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1474-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1475 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1475-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1476 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1476-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1477 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1477-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1478 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1478-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1479 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1479-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_147 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_147-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1480 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1480-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1481 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1481-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1482 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1482-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1483 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1483-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1484 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1484-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1485 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1485-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1486 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1486-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1487 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1487-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1488 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1488-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1489 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1489-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_148 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_148-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1490 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1490-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1491 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1491-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1492 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1492-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1493 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1493-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1494 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1494-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1495 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1495-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1496 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1496-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1497 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1497-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1498 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1498-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1499 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1499-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_149 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_149-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_14 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_14-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1500 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1500-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1501 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1501-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1502 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1502-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1503 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1503-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1504 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1504-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1505 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1505-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1506 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1506-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1507 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1507-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1508 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1508-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1509 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1509-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_150 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_150-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1510 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1510-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1511 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1511-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1512 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1512-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1513 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1513-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1514 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1514-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1515 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1515-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1516 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1516-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1517 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1517-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1518 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1518-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1519 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1519-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_151 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_151-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1520 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1520-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1521 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1521-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1522 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1522-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1523 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1523-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1524 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1524-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1525 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1525-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1526 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1526-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1527 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1527-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1528 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1528-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1529 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1529-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_152 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_152-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1530 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1530-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1531 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1531-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1532 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1532-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1533 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1533-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1534 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1534-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1535 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1535-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1536 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1536-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1537 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1537-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1538 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1538-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1539 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1539-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_153 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_153-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1540 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1540-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1541 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1541-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1542 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1542-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1543 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1543-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1544 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1544-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1545 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1545-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1546 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1546-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1547 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1547-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1548 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1548-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1549 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1549-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_154 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_154-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1550 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1550-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1551 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1551-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1552 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1552-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1553 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1553-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1554 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1554-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1555 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1555-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1556 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1556-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1557 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1557-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1558 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1558-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1559 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1559-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_155 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_155-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1560 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1560-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1561 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1561-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1562 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1562-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1563 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1563-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1564 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1564-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1565 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1565-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1566 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1566-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1567 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1567-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1568 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1568-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1569 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1569-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_156 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_156-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1570 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1570-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1571 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1571-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1572 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1572-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1573 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1573-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1574 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1574-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1575 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1575-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1576 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1576-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1577 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1577-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1578 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1578-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1579 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1579-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_157 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_157-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1580 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1580-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1581 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1581-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1582 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1582-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1583 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1583-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1584 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1584-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1585 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1585-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1586 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1586-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1587 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1587-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1588 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1588-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1589 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1589-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_158 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_158-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1590 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1590-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1591 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1591-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1592 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1592-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1593 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1593-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1594 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1594-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1595 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1595-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1596 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1596-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1597 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1597-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1598 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1598-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1599 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1599-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_159 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_159-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_15 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_15-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1600 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1600-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1601 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1601-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1602 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1602-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1603 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1603-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1604 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1604-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1605 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1605-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1606 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1606-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1607 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1607-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1608 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1608-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1609 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1609-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_160 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_160-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1610 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1610-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1611 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1611-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1612 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1612-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1613 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1613-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1614 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1614-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1615 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1615-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1616 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1616-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1617 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1617-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1618 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1618-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1619 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1619-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_161 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_161-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1620 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1620-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1621 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1621-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1622 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1622-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1623 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1623-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1624 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1624-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_162 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_162-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_163 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_163-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_164 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_164-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_165 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_165-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_166 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_166-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_167 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_167-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_168 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_168-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_169 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_169-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_16 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_16-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_170 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_170-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_171 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_171-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_172 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_172-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_173 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_173-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_174 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_174-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_175 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_175-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_176 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_176-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_177 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_177-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_178 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_178-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_179 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_179-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_17 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_17-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_180 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_180-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_181 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_181-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_182 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_182-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_183 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_183-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_184 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_184-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_185 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_185-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_186 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_186-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_187 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_187-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_188 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_188-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_189 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_189-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_18 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_18-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_190 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_190-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_191 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_191-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_192 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_192-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_193 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_193-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_194 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_194-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_195 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_195-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_196 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_196-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_197 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_197-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_198 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_198-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_199 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_199-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_19 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_19-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_1-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_200 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_200-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_201 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_201-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_202 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_202-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_203 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_203-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_204 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_204-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_205 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_205-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_206 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_206-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_207 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_207-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_208 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_208-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_209 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_209-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_20 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_20-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_210 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_210-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_211 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_211-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_212 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_212-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_213 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_213-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_214 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_214-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_215 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_215-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_216 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_216-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_217 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_217-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_218 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_218-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_219 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_219-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_21 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_21-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_220 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_220-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_221 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_221-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_222 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_222-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_223 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_223-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_224 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_224-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_225 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_225-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_226 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_226-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_227 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_227-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_228 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_228-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_229 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_229-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_22 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_22-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_230 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_230-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_231 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_231-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_232 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_232-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_233 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_233-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_234 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_234-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_235 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_235-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_236 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_236-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_237 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_237-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_238 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_238-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_239 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_239-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_23 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_23-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_240 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_240-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_241 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_241-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_242 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_242-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_243 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_243-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_244 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_244-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_245 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_245-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_246 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_246-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_247 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_247-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_248 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_248-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_249 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_249-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_24 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_24-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_250 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_250-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_251 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_251-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_252 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_252-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_253 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_253-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_254 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_254-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_255 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_255-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_256 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_256-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_257 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_257-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_258 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_258-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_259 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_259-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_25 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_25-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_260 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_260-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_261 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_261-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_262 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_262-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_263 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_263-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_264 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_264-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_265 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_265-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_266 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_266-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_267 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_267-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_268 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_268-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_269 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_269-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_26 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_26-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_270 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_270-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_271 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_271-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_272 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_272-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_273 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_273-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_274 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_274-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_275 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_275-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_276 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_276-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_277 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_277-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_278 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_278-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_279 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_279-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_27 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_27-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_280 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_280-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_281 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_281-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_282 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_282-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_283 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_283-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_284 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_284-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_285 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_285-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_286 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_286-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_287 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_287-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_288 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_288-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_289 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_289-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_28 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_28-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_290 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_290-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_291 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_291-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_292 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_292-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_293 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_293-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_294 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_294-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_295 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_295-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_296 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_296-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_297 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_297-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_298 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_298-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_299 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_299-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_29 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_29-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_2 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_2-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_300 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_300-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_301 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_301-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_302 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_302-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_303 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_303-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_304 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_304-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_305 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_305-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_306 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_306-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_307 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_307-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_308 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_308-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_309 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_309-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_30 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_30-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_310 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_310-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_311 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_311-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_312 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_312-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_313 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_313-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_314 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_314-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_315 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_315-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_316 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_316-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_317 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_317-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_318 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_318-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_319 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_319-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_31 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_31-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_320 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_320-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_321 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_321-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_322 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_322-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_323 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_323-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_324 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_324-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_325 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_325-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_326 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_326-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_327 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_327-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_328 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_328-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_329 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_329-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_32 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_32-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_330 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_330-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_331 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_331-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_332 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_332-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_333 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_333-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_334 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_334-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_335 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_335-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_336 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_336-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_337 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_337-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_338 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_338-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_339 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_339-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_33 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_33-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_340 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_340-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_341 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_341-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_342 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_342-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_343 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_343-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_344 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_344-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_345 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_345-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_346 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_346-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_347 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_347-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_348 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_348-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_349 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_349-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_34 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_34-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_350 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_350-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_351 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_351-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_352 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_352-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_353 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_353-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_354 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_354-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_355 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_355-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_356 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_356-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_357 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_357-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_358 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_358-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_359 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_359-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_35 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_35-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_360 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_360-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_361 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_361-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_362 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_362-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_363 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_363-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_364 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_364-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_365 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_365-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_366 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_366-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_367 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_367-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_368 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_368-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_369 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_369-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_36 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_36-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_370 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_370-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_371 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_371-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_372 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_372-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_373 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_373-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_374 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_374-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_375 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_375-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_376 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_376-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_377 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_377-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_378 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_378-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_379 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_379-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_37 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_37-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_380 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_380-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_381 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_381-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_382 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_382-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_383 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_383-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_384 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_384-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_385 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_385-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_386 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_386-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_387 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_387-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_388 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_388-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_389 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_389-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_38 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_38-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_390 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_390-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_391 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_391-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_392 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_392-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_393 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_393-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_394 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_394-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_395 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_395-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_396 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_396-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_397 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_397-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_398 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_398-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_399 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_399-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_39 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_39-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_3 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_3-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_400 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_400-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_401 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_401-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_402 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_402-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_403 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_403-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_404 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_404-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_405 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_405-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_406 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_406-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_407 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_407-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_408 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_408-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_409 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_409-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_40 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_40-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_410 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_410-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_411 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_411-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_412 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_412-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_413 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_413-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_414 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_414-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_415 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_415-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_416 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_416-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_417 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_417-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_418 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_418-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_419 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_419-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_41 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_41-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_420 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_420-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_421 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_421-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_422 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_422-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_423 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_423-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_424 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_424-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_425 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_425-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_426 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_426-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_427 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_427-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_428 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_428-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_429 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_429-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_42 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_42-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_430 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_430-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_431 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_431-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_432 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_432-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_433 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_433-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_434 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_434-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_435 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_435-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_436 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_436-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_437 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_437-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_438 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_438-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_439 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_439-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_43 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_43-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_440 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_440-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_441 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_441-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_442 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_442-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_443 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_443-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_444 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_444-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_445 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_445-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_446 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_446-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_447 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_447-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_448 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_448-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_449 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_449-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_44 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_44-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_450 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_450-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_451 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_451-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_452 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_452-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_453 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_453-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_454 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_454-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_455 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_455-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_456 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_456-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_457 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_457-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_458 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_458-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_459 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_459-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_45 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_45-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_460 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_460-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_461 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_461-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_462 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_462-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_463 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_463-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_464 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_464-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_465 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_465-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_466 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_466-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_467 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_467-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_468 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_468-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_469 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_469-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_46 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_46-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_470 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_470-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_471 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_471-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_472 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_472-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_473 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_473-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_474 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_474-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_475 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_475-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_476 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_476-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_477 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_477-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_478 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_478-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_479 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_479-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_47 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_47-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_480 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_480-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_481 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_481-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_482 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_482-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_483 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_483-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_484 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_484-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_485 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_485-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_486 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_486-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_487 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_487-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_488 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_488-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_489 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_489-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_48 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_48-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_490 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_490-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_491 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_491-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_492 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_492-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_493 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_493-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_494 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_494-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_495 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_495-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_496 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_496-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_497 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_497-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_498 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_498-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_499 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_499-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_49 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_49-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_4 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_4-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_500 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_500-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_501 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_501-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_502 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_502-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_503 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_503-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_504 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_504-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_505 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_505-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_506 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_506-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_507 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_507-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_508 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_508-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_509 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_509-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_50 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_50-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_510 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_510-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_511 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_511-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_512 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_512-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_513 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_513-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_514 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_514-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_515 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_515-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_516 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_516-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_517 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_517-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_518 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_518-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_519 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_519-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_51 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_51-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_520 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_520-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_521 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_521-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_522 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_522-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_523 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_523-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_524 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_524-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_525 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_525-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_526 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_526-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_527 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_527-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_528 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_528-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_529 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_529-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_52 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_52-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_530 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_530-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_531 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_531-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_532 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_532-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_533 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_533-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_534 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_534-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_535 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_535-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_536 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_536-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_537 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_537-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_538 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_538-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_539 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_539-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_53 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_53-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_540 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_540-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_541 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_541-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_542 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_542-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_543 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_543-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_544 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_544-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_545 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_545-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_546 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_546-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_547 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_547-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_548 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_548-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_549 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_549-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_54 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_54-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_550 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_550-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_551 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_551-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_552 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_552-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_553 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_553-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_554 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_554-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_555 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_555-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_556 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_556-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_557 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_557-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_558 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_558-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_559 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_559-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_55 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_55-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_560 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_560-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_561 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_561-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_562 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_562-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_563 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_563-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_564 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_564-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_565 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_565-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_566 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_566-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_567 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_567-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_568 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_568-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_569 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_569-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_56 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_56-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_570 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_570-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_571 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_571-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_572 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_572-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_573 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_573-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_574 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_574-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_575 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_575-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_576 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_576-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_577 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_577-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_578 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_578-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_579 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_579-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_57 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_57-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_580 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_580-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_581 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_581-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_582 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_582-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_583 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_583-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_584 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_584-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_585 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_585-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_586 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_586-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_587 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_587-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_588 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_588-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_589 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_589-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_58 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_58-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_590 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_590-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_591 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_591-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_592 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_592-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_593 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_593-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_594 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_594-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_595 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_595-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_596 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_596-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_597 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_597-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_598 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_598-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_599 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_599-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_59 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_59-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_5 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_5-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_600 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_600-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_601 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_601-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_602 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_602-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_603 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_603-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_604 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_604-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_605 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_605-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_606 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_606-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_607 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_607-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_608 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_608-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_609 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_609-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_60 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_60-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_610 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_610-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_611 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_611-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_612 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_612-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_613 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_613-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_614 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_614-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_615 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_615-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_616 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_616-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_617 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_617-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_618 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_618-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_619 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_619-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_61 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_61-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_620 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_620-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_621 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_621-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_622 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_622-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_623 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_623-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_624 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_624-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_625 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_625-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_626 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_626-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_627 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_627-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_628 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_628-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_629 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_629-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_62 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_62-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_630 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_630-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_631 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_631-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_632 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_632-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_633 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_633-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_634 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_634-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_635 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_635-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_636 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_636-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_637 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_637-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_638 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_638-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_639 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_639-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_63 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_63-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_640 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_640-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_641 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_641-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_642 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_642-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_643 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_643-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_644 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_644-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_645 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_645-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_646 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_646-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_647 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_647-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_648 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_648-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_649 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_649-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_64 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_64-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_650 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_650-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_651 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_651-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_652 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_652-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_653 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_653-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_654 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_654-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_655 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_655-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_656 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_656-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_657 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_657-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_658 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_658-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_659 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_659-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_65 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_65-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_660 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_660-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_661 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_661-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_662 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_662-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_663 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_663-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_664 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_664-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_665 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_665-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_666 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_666-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_667 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_667-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_668 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_668-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_669 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_669-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_66 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_66-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_670 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_670-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_671 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_671-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_672 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_672-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_673 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_673-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_674 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_674-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_675 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_675-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_676 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_676-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_677 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_677-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_678 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_678-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_679 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_679-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_67 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_67-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_680 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_680-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_681 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_681-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_682 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_682-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_683 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_683-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_684 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_684-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_685 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_685-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_686 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_686-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_687 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_687-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_688 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_688-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_689 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_689-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_68 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_68-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_690 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_690-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_691 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_691-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_692 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_692-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_693 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_693-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_694 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_694-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_695 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_695-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_696 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_696-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_697 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_697-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_698 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_698-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_699 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_699-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_69 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_69-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_6 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_6-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_700 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_700-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_701 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_701-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_702 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_702-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_703 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_703-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_704 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_704-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_705 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_705-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_706 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_706-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_707 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_707-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_708 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_708-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_709 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_709-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_70 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_70-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_710 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_710-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_711 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_711-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_712 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_712-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_713 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_713-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_714 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_714-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_715 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_715-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_716 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_716-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_717 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_717-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_718 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_718-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_719 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_719-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_71 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_71-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_720 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_720-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_721 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_721-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_722 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_722-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_723 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_723-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_724 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_724-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_725 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_725-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_726 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_726-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_727 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_727-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_728 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_728-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_729 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_729-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_72 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_72-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_730 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_730-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_731 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_731-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_732 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_732-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_733 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_733-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_734 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_734-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_735 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_735-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_736 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_736-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_737 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_737-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_738 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_738-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_739 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_739-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_73 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_73-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_740 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_740-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_741 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_741-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_742 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_742-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_743 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_743-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_744 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_744-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_745 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_745-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_746 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_746-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_747 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_747-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_748 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_748-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_749 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_749-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_74 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_74-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_750 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_750-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_751 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_751-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_752 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_752-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_753 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_753-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_754 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_754-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_755 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_755-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_756 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_756-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_757 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_757-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_758 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_758-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_759 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_759-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_75 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_75-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_760 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_760-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_761 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_761-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_762 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_762-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_763 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_763-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_764 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_764-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_765 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_765-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_766 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_766-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_767 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_767-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_768 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_768-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_769 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_769-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_76 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_76-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_770 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_770-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_771 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_771-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_772 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_772-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_773 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_773-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_774 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_774-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_775 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_775-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_776 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_776-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_777 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_777-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_778 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_778-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_779 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_779-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_77 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_77-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_780 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_780-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_781 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_781-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_782 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_782-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_783 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_783-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_784 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_784-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_785 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_785-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_786 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_786-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_787 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_787-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_788 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_788-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_789 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_789-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_78 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_78-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_790 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_790-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_791 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_791-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_792 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_792-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_793 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_793-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_794 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_794-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_795 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_795-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_796 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_796-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_797 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_797-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_798 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_798-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_799 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_799-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_79 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_79-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_7 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_7-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_800 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_800-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_801 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_801-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_802 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_802-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_803 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_803-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_804 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_804-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_805 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_805-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_806 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_806-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_807 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_807-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_808 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_808-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_809 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_809-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_80 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_80-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_810 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_810-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_811 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_811-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_812 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_812-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_813 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_813-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_814 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_814-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_815 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_815-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_816 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_816-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_817 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_817-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_818 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_818-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_819 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_819-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_81 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_81-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_820 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_820-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_821 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_821-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_822 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_822-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_823 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_823-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_824 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_824-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_825 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_825-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_826 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_826-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_827 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_827-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_828 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_828-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_829 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_829-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_82 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_82-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_830 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_830-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_831 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_831-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_832 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_832-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_833 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_833-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_834 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_834-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_835 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_835-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_836 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_836-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_837 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_837-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_838 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_838-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_839 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_839-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_83 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_83-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_840 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_840-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_841 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_841-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_842 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_842-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_843 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_843-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_844 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_844-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_845 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_845-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_846 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_846-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_847 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_847-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_848 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_848-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_849 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_849-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_84 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_84-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_850 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_850-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_851 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_851-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_852 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_852-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_853 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_853-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_854 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_854-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_855 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_855-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_856 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_856-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_857 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_857-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_858 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_858-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_859 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_859-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_85 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_85-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_860 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_860-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_861 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_861-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_862 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_862-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_863 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_863-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_864 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_864-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_865 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_865-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_866 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_866-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_867 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_867-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_868 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_868-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_869 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_869-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_86 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_86-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_870 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_870-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_871 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_871-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_872 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_872-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_873 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_873-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_874 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_874-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_875 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_875-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_876 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_876-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_877 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_877-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_878 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_878-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_879 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_879-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_87 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_87-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_880 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_880-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_881 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_881-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_882 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_882-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_883 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_883-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_884 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_884-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_885 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_885-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_886 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_886-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_887 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_887-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_888 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_888-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_889 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_889-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_88 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_88-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_890 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_890-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_891 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_891-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_892 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_892-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_893 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_893-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_894 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_894-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_895 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_895-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_896 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_896-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_897 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_897-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_898 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_898-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_899 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_899-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_89 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_89-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_8 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_8-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_900 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_900-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_901 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_901-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_902 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_902-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_903 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_903-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_904 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_904-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_905 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_905-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_906 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_906-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_907 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_907-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_908 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_908-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_909 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_909-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_90 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_90-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_910 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_910-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_911 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_911-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_912 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_912-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_913 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_913-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_914 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_914-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_915 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_915-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_916 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_916-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_917 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_917-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_918 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_918-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_919 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_919-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_91 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_91-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_920 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_920-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_921 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_921-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_922 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_922-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_923 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_923-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_924 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_924-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_925 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_925-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_926 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_926-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_927 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_927-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_928 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_928-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_929 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_929-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_92 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_92-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_930 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_930-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_931 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_931-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_932 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_932-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_933 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_933-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_934 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_934-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_935 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_935-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_936 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_936-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_937 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_937-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_938 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_938-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_939 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_939-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_93 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_93-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_940 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_940-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_941 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_941-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_942 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_942-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_943 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_943-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_944 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_944-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_945 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_945-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_946 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_946-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_947 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_947-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_948 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_948-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_949 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_949-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_94 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_94-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_950 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_950-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_951 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_951-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_952 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_952-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_953 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_953-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_954 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_954-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_955 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_955-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_956 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_956-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_957 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_957-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_958 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_958-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_959 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_959-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_95 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_95-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_960 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_960-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_961 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_961-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_962 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_962-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_963 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_963-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_964 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_964-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_965 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_965-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_966 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_966-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_967 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_967-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_968 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_968-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_969 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_969-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_96 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_96-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_970 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_970-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_971 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_971-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_972 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_972-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_973 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_973-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_974 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_974-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_975 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_975-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_976 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_976-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_977 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_977-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_978 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_978-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_979 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_979-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_97 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_97-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_980 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_980-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_981 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_981-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_982 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_982-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_983 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_983-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_984 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_984-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_985 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_985-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_986 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_986-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_987 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_987-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_988 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_988-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_989 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_989-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_98 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_98-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_990 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_990-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_991 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_991-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_992 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_992-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_993 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_993-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_994 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_994-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_995 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_995-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_996 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_996-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_997 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_997-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_998 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_998-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_999 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_999-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_99 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_99-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_1_fast5_pass/PAI41159_pass_9a0cad82_9 -s fio1_1_fast5_pass/PAI41159_pass_9a0cad82_9-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_0 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_0-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1000 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1000-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1001 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1001-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1002 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1002-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1003 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1003-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1004 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1004-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1005 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1005-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1006 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1006-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1007 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1007-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1008 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1008-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1009 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1009-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_100 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_100-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1010 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1010-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1011 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1011-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1012 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1012-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1013 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1013-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1014 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1014-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1015 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1015-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1016 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1016-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1017 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1017-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1018 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1018-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1019 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1019-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_101 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_101-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1020 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1020-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1021 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1021-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1022 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1022-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1023 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1023-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1024 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1024-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1025 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1025-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1026 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1026-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1027 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1027-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1028 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1028-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1029 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1029-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_102 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_102-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1030 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1030-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1031 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1031-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1032 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1032-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1033 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1033-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1034 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1034-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1035 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1035-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1036 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1036-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1037 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1037-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1038 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1038-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1039 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1039-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_103 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_103-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1040 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1040-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1041 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1041-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1042 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1042-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1043 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1043-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1044 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1044-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1045 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1045-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1046 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1046-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1047 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1047-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1048 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1048-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1049 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1049-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_104 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_104-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1050 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1050-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1051 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1051-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1052 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1052-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1053 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1053-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1054 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1054-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1055 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1055-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1056 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1056-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1057 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1057-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1058 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1058-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1059 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1059-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_105 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_105-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1060 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1060-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1061 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1061-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1062 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1062-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1063 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1063-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1064 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1064-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1065 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1065-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1066 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1066-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1067 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1067-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1068 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1068-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1069 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1069-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_106 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_106-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1070 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1070-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1071 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1071-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1072 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1072-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1073 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1073-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1074 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1074-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1075 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1075-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1076 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1076-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1077 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1077-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1078 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1078-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1079 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1079-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_107 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_107-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1080 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1080-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1081 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1081-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1082 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1082-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1083 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1083-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1084 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1084-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1085 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1085-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1086 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1086-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1087 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1087-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1088 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1088-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1089 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1089-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_108 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_108-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1090 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1090-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1091 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1091-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1092 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1092-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1093 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1093-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1094 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1094-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1095 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1095-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1096 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1096-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1097 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1097-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1098 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1098-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1099 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1099-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_109 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_109-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_10 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_10-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1100 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1100-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1101 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1101-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1102 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1102-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1103 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1103-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1104 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1104-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1105 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1105-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1106 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1106-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1107 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1107-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1108 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1108-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1109 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1109-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_110 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_110-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1110 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1110-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1111 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1111-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1112 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1112-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1113 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1113-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1114 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1114-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1115 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1115-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1116 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1116-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1117 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1117-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1118 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1118-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1119 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1119-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_111 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_111-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1120 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1120-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1121 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1121-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1122 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1122-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1123 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1123-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1124 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1124-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1125 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1125-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1126 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1126-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1127 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1127-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1128 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1128-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1129 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1129-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_112 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_112-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1130 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1130-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1131 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1131-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1132 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1132-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1133 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1133-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1134 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1134-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1135 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1135-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1136 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1136-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1137 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1137-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1138 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1138-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1139 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1139-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_113 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_113-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1140 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1140-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1141 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1141-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1142 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1142-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1143 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1143-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1144 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1144-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1145 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1145-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1146 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1146-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1147 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1147-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1148 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1148-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1149 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1149-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_114 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_114-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1150 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1150-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1151 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1151-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1152 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1152-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1153 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1153-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1154 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1154-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1155 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1155-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1156 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1156-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1157 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1157-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1158 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1158-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1159 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1159-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_115 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_115-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1160 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1160-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1161 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1161-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1162 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1162-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1163 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1163-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1164 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1164-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1165 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1165-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1166 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1166-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1167 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1167-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1168 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1168-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1169 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1169-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_116 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_116-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1170 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1170-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1171 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1171-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1172 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1172-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1173 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1173-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1174 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1174-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1175 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1175-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1176 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1176-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1177 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1177-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1178 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1178-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1179 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1179-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_117 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_117-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1180 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1180-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1181 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1181-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1182 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1182-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1183 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1183-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1184 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1184-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1185 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1185-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1186 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1186-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1187 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1187-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1188 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1188-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1189 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1189-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_118 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_118-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1190 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1190-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1191 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1191-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1192 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1192-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1193 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1193-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1194 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1194-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1195 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1195-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1196 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1196-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1197 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1197-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1198 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1198-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1199 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1199-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_119 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_119-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_11 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_11-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1200 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1200-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1201 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1201-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1202 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1202-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1203 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1203-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1204 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1204-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1205 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1205-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1206 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1206-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1207 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1207-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1208 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1208-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1209 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1209-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_120 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_120-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1210 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1210-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1211 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1211-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1212 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1212-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1213 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1213-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1214 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1214-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1215 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1215-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1216 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1216-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1217 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1217-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1218 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1218-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1219 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1219-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_121 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_121-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1220 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1220-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1221 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1221-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1222 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1222-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1223 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1223-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1224 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1224-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1225 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1225-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1226 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1226-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1227 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1227-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1228 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1228-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1229 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1229-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_122 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_122-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1230 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1230-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1231 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1231-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1232 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1232-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1233 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1233-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1234 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1234-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1235 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1235-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1236 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1236-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1237 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1237-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1238 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1238-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1239 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1239-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_123 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_123-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1240 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1240-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1241 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1241-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1242 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1242-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1243 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1243-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1244 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1244-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1245 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1245-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1246 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1246-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1247 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1247-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1248 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1248-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1249 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1249-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_124 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_124-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1250 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1250-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1251 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1251-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1252 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1252-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1253 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1253-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1254 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1254-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1255 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1255-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1256 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1256-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1257 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1257-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1258 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1258-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1259 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1259-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_125 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_125-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1260 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1260-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1261 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1261-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1262 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1262-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1263 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1263-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1264 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1264-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1265 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1265-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1266 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1266-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1267 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1267-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1268 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1268-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1269 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1269-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_126 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_126-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1270 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1270-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1271 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1271-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1272 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1272-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1273 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1273-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1274 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1274-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1275 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1275-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1276 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1276-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1277 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1277-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1278 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1278-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1279 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1279-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_127 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_127-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1280 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1280-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1281 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1281-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1282 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1282-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1283 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1283-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1284 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1284-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1285 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1285-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1286 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1286-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1287 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1287-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1288 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1288-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1289 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1289-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_128 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_128-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1290 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1290-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1291 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1291-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1292 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1292-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1293 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1293-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1294 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1294-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1295 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1295-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1296 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1296-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1297 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1297-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1298 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1298-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1299 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1299-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_129 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_129-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_12 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_12-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1300 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1300-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1301 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1301-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1302 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1302-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1303 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1303-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1304 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1304-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1305 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1305-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1306 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1306-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1307 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1307-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1308 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1308-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1309 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1309-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_130 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_130-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1310 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1310-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1311 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1311-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1312 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1312-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1313 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1313-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1314 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1314-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1315 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1315-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1316 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1316-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1317 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1317-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1318 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1318-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1319 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1319-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_131 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_131-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1320 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1320-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1321 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1321-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1322 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1322-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1323 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1323-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1324 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1324-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1325 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1325-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1326 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1326-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1327 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1327-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1328 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1328-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1329 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1329-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_132 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_132-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1330 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1330-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1331 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1331-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1332 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1332-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1333 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1333-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1334 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1334-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1335 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1335-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1336 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1336-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1337 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1337-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1338 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1338-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1339 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1339-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_133 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_133-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1340 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1340-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1341 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1341-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1342 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1342-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1343 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1343-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1344 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1344-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1345 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1345-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1346 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1346-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1347 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1347-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1348 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1348-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1349 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1349-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_134 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_134-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1350 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1350-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1351 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1351-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1352 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1352-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1353 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1353-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1354 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1354-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1355 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1355-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1356 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1356-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1357 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1357-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1358 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1358-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1359 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1359-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_135 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_135-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1360 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1360-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1361 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1361-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1362 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1362-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1363 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1363-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1364 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1364-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1365 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1365-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1366 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1366-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1367 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1367-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1368 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1368-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1369 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1369-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_136 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_136-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1370 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1370-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1371 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1371-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1372 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1372-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1373 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1373-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1374 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1374-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1375 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1375-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1376 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1376-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1377 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1377-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1378 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1378-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1379 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1379-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_137 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_137-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1380 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1380-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1381 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1381-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1382 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1382-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1383 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1383-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1384 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1384-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1385 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1385-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1386 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1386-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1387 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1387-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1388 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1388-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1389 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1389-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_138 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_138-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1390 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1390-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1391 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1391-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1392 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1392-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1393 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1393-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1394 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1394-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1395 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1395-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1396 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1396-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1397 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1397-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1398 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1398-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1399 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1399-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_139 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_139-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_13 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_13-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1400 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1400-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1401 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1401-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1402 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1402-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1403 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1403-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1404 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1404-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1405 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1405-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1406 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1406-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1407 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1407-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1408 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1408-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1409 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1409-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_140 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_140-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1410 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1410-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1411 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1411-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1412 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1412-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1413 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1413-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1414 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1414-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1415 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1415-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1416 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1416-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1417 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1417-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1418 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1418-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1419 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1419-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_141 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_141-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1420 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1420-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1421 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1421-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1422 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1422-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1423 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1423-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1424 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1424-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1425 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1425-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1426 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1426-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1427 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1427-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1428 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1428-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1429 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1429-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_142 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_142-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1430 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1430-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1431 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1431-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1432 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1432-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1433 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1433-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1434 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1434-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1435 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1435-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1436 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1436-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1437 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1437-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1438 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1438-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1439 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1439-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_143 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_143-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1440 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1440-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1441 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1441-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1442 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1442-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1443 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1443-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1444 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1444-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1445 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1445-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1446 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1446-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1447 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1447-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1448 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1448-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1449 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1449-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_144 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_144-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1450 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1450-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1451 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1451-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1452 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1452-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1453 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1453-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1454 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1454-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1455 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1455-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1456 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1456-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1457 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1457-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1458 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1458-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1459 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1459-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_145 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_145-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1460 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1460-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1461 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1461-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1462 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1462-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1463 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1463-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1464 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1464-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1465 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1465-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1466 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1466-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1467 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1467-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1468 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1468-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1469 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1469-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_146 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_146-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1470 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1470-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1471 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1471-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1472 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1472-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1473 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1473-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1474 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1474-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1475 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1475-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1476 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1476-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1477 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1477-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1478 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1478-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1479 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1479-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_147 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_147-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1480 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1480-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1481 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1481-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1482 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1482-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1483 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1483-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1484 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1484-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1485 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1485-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1486 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1486-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1487 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1487-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1488 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1488-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1489 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1489-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_148 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_148-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1490 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1490-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1491 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1491-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1492 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1492-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1493 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1493-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1494 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1494-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1495 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1495-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1496 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1496-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1497 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1497-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1498 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1498-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1499 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1499-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_149 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_149-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_14 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_14-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1500 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1500-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1501 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1501-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1502 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1502-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1503 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1503-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1504 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1504-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1505 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1505-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1506 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1506-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1507 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1507-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1508 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1508-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1509 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1509-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_150 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_150-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1510 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1510-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1511 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1511-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1512 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1512-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1513 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1513-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1514 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1514-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1515 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1515-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1516 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1516-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1517 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1517-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1518 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1518-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1519 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1519-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_151 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_151-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1520 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1520-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1521 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1521-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1522 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1522-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1523 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1523-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1524 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1524-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1525 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1525-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1526 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1526-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1527 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1527-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1528 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1528-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1529 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1529-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_152 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_152-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1530 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1530-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1531 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1531-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1532 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1532-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1533 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1533-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1534 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1534-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1535 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1535-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1536 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1536-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1537 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1537-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1538 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1538-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1539 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1539-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_153 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_153-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1540 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1540-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1541 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1541-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1542 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1542-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1543 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1543-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1544 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1544-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1545 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1545-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1546 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1546-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1547 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1547-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1548 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1548-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1549 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1549-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_154 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_154-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1550 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1550-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1551 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1551-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1552 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1552-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1553 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1553-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1554 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1554-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1555 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1555-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1556 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1556-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1557 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1557-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1558 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1558-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1559 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1559-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_155 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_155-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1560 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1560-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1561 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1561-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1562 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1562-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1563 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1563-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1564 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1564-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1565 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1565-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1566 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1566-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1567 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1567-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1568 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1568-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1569 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1569-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_156 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_156-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1570 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1570-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1571 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1571-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1572 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1572-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1573 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1573-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1574 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1574-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1575 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1575-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1576 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1576-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1577 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1577-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1578 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1578-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1579 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1579-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_157 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_157-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1580 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1580-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1581 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1581-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1582 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1582-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1583 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1583-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1584 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1584-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1585 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1585-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1586 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1586-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1587 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1587-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1588 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1588-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1589 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1589-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_158 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_158-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1590 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1590-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1591 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1591-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1592 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1592-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1593 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1593-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1594 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1594-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1595 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1595-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1596 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1596-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1597 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1597-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1598 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1598-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1599 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1599-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_159 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_159-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_15 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_15-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1600 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1600-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1601 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1601-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1602 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1602-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1603 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1603-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1604 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1604-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1605 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1605-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1606 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1606-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1607 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1607-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1608 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1608-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1609 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1609-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_160 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_160-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1610 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1610-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1611 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1611-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1612 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1612-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1613 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1613-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1614 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1614-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1615 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1615-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1616 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1616-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1617 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1617-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1618 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1618-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1619 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1619-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_161 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_161-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1620 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1620-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1621 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1621-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1622 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1622-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1623 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1623-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1624 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1624-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1625 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1625-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1626 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1626-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1627 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1627-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1628 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1628-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1629 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1629-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_162 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_162-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1630 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1630-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1631 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1631-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1632 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1632-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1633 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1633-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1634 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1634-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1635 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1635-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1636 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1636-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1637 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1637-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1638 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1638-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1639 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1639-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_163 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_163-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1640 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1640-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1641 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1641-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1642 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1642-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1643 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1643-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1644 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1644-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1645 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1645-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1646 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1646-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1647 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1647-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1648 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1648-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1649 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1649-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_164 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_164-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1650 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1650-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1651 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1651-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1652 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1652-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1653 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1653-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1654 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1654-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1655 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1655-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1656 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1656-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1657 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1657-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1658 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1658-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1659 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1659-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_165 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_165-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1660 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1660-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1661 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1661-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1662 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1662-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1663 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1663-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1664 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1664-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1665 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1665-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1666 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1666-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1667 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1667-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1668 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1668-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1669 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1669-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_166 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_166-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1670 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1670-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1671 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1671-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1672 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1672-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1673 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1673-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1674 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1674-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1675 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1675-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1676 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1676-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1677 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1677-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1678 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1678-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1679 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1679-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_167 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_167-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1680 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1680-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1681 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1681-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1682 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1682-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1683 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1683-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1684 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1684-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1685 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1685-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1686 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1686-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1687 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1687-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1688 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1688-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1689 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1689-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_168 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_168-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1690 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1690-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1691 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1691-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1692 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1692-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1693 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1693-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1694 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1694-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1695 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1695-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1696 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1696-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1697 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1697-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1698 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1698-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1699 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1699-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_169 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_169-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_16 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_16-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1700 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1700-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1701 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1701-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1702 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1702-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1703 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1703-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1704 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1704-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1705 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1705-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1706 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1706-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1707 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1707-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1708 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1708-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1709 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1709-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_170 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_170-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1710 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1710-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1711 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1711-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1712 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1712-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1713 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1713-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1714 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1714-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1715 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1715-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1716 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1716-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1717 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1717-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1718 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1718-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1719 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1719-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_171 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_171-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1720 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1720-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1721 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1721-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1722 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1722-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1723 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1723-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1724 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1724-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1725 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1725-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1726 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1726-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1727 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1727-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1728 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1728-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1729 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1729-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_172 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_172-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1730 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1730-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1731 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1731-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1732 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1732-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1733 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1733-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1734 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1734-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1735 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1735-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1736 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1736-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1737 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1737-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1738 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1738-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1739 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1739-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_173 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_173-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1740 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1740-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1741 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1741-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1742 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1742-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1743 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1743-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1744 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1744-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1745 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1745-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1746 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1746-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1747 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1747-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1748 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1748-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1749 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1749-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_174 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_174-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1750 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1750-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1751 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1751-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1752 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1752-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1753 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1753-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1754 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1754-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1755 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1755-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1756 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1756-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1757 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1757-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1758 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1758-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1759 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1759-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_175 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_175-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1760 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1760-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1761 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1761-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1762 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1762-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_176 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_176-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_177 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_177-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_178 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_178-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_179 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_179-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_17 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_17-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_180 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_180-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_181 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_181-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_182 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_182-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_183 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_183-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_184 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_184-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_185 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_185-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_186 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_186-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_187 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_187-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_188 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_188-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_189 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_189-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_18 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_18-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_190 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_190-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_191 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_191-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_192 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_192-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_193 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_193-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_194 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_194-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_195 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_195-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_196 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_196-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_197 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_197-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_198 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_198-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_199 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_199-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_19 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_19-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_1-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_200 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_200-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_201 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_201-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_202 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_202-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_203 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_203-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_204 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_204-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_205 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_205-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_206 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_206-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_207 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_207-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_208 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_208-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_209 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_209-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_20 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_20-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_210 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_210-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_211 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_211-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_212 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_212-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_213 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_213-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_214 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_214-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_215 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_215-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_216 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_216-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_217 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_217-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_218 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_218-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_219 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_219-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_21 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_21-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_220 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_220-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_221 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_221-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_222 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_222-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_223 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_223-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_224 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_224-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_225 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_225-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_226 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_226-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_227 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_227-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_228 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_228-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_229 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_229-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_22 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_22-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_230 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_230-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_231 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_231-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_232 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_232-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_233 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_233-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_234 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_234-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_235 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_235-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_236 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_236-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_237 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_237-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_238 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_238-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_239 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_239-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_23 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_23-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_240 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_240-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_241 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_241-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_242 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_242-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_243 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_243-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_244 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_244-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_245 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_245-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_246 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_246-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_247 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_247-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_248 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_248-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_249 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_249-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_24 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_24-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_250 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_250-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_251 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_251-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_252 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_252-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_253 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_253-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_254 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_254-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_255 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_255-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_256 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_256-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_257 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_257-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_258 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_258-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_259 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_259-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_25 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_25-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_260 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_260-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_261 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_261-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_262 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_262-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_263 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_263-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_264 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_264-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_265 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_265-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_266 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_266-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_267 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_267-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_268 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_268-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_269 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_269-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_26 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_26-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_270 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_270-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_271 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_271-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_272 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_272-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_273 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_273-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_274 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_274-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_275 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_275-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_276 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_276-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_277 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_277-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_278 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_278-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_279 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_279-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_27 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_27-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_280 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_280-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_281 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_281-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_282 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_282-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_283 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_283-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_284 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_284-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_285 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_285-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_286 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_286-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_287 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_287-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_288 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_288-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_289 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_289-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_28 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_28-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_290 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_290-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_291 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_291-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_292 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_292-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_293 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_293-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_294 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_294-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_295 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_295-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_296 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_296-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_297 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_297-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_298 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_298-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_299 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_299-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_29 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_29-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_2 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_2-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_300 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_300-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_301 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_301-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_302 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_302-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_303 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_303-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_304 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_304-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_305 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_305-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_306 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_306-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_307 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_307-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_308 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_308-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_309 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_309-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_30 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_30-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_310 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_310-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_311 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_311-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_312 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_312-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_313 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_313-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_314 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_314-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_315 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_315-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_316 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_316-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_317 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_317-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_318 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_318-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_319 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_319-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_31 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_31-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_320 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_320-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_321 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_321-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_322 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_322-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_323 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_323-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_324 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_324-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_325 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_325-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_326 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_326-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_327 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_327-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_328 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_328-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_329 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_329-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_32 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_32-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_330 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_330-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_331 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_331-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_332 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_332-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_333 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_333-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_334 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_334-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_335 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_335-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_336 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_336-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_337 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_337-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_338 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_338-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_339 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_339-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_33 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_33-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_340 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_340-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_341 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_341-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_342 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_342-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_343 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_343-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_344 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_344-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_345 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_345-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_346 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_346-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_347 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_347-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_348 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_348-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_349 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_349-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_34 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_34-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_350 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_350-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_351 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_351-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_352 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_352-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_353 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_353-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_354 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_354-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_355 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_355-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_356 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_356-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_357 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_357-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_358 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_358-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_359 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_359-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_35 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_35-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_360 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_360-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_361 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_361-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_362 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_362-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_363 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_363-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_364 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_364-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_365 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_365-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_366 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_366-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_367 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_367-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_368 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_368-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_369 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_369-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_36 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_36-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_370 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_370-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_371 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_371-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_372 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_372-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_373 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_373-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_374 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_374-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_375 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_375-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_376 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_376-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_377 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_377-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_378 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_378-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_379 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_379-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_37 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_37-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_380 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_380-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_381 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_381-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_382 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_382-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_383 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_383-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_384 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_384-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_385 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_385-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_386 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_386-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_387 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_387-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_388 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_388-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_389 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_389-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_38 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_38-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_390 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_390-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_391 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_391-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_392 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_392-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_393 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_393-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_394 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_394-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_395 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_395-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_396 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_396-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_397 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_397-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_398 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_398-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_399 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_399-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_39 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_39-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_3 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_3-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_400 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_400-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_401 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_401-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_402 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_402-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_403 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_403-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_404 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_404-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_405 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_405-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_406 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_406-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_407 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_407-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_408 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_408-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_409 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_409-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_40 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_40-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_410 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_410-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_411 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_411-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_412 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_412-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_413 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_413-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_414 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_414-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_415 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_415-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_416 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_416-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_417 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_417-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_418 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_418-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_419 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_419-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_41 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_41-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_420 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_420-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_421 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_421-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_422 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_422-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_423 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_423-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_424 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_424-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_425 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_425-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_426 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_426-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_427 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_427-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_428 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_428-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_429 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_429-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_42 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_42-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_430 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_430-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_431 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_431-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_432 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_432-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_433 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_433-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_434 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_434-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_435 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_435-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_436 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_436-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_437 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_437-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_438 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_438-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_439 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_439-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_43 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_43-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_440 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_440-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_441 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_441-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_442 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_442-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_443 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_443-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_444 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_444-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_445 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_445-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_446 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_446-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_447 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_447-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_448 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_448-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_449 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_449-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_44 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_44-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_450 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_450-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_451 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_451-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_452 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_452-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_453 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_453-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_454 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_454-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_455 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_455-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_456 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_456-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_457 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_457-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_458 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_458-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_459 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_459-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_45 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_45-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_460 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_460-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_461 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_461-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_462 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_462-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_463 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_463-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_464 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_464-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_465 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_465-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_466 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_466-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_467 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_467-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_468 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_468-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_469 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_469-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_46 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_46-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_470 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_470-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_471 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_471-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_472 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_472-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_473 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_473-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_474 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_474-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_475 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_475-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_476 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_476-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_477 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_477-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_478 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_478-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_479 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_479-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_47 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_47-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_480 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_480-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_481 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_481-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_482 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_482-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_483 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_483-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_484 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_484-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_485 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_485-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_486 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_486-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_487 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_487-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_488 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_488-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_489 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_489-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_48 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_48-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_490 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_490-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_491 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_491-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_492 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_492-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_493 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_493-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_494 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_494-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_495 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_495-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_496 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_496-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_497 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_497-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_498 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_498-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_499 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_499-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_49 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_49-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_4 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_4-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_500 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_500-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_501 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_501-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_502 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_502-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_503 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_503-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_504 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_504-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_505 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_505-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_506 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_506-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_507 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_507-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_508 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_508-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_509 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_509-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_50 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_50-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_510 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_510-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_511 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_511-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_512 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_512-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_513 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_513-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_514 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_514-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_515 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_515-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_516 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_516-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_517 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_517-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_518 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_518-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_519 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_519-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_51 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_51-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_520 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_520-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_521 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_521-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_522 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_522-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_523 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_523-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_524 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_524-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_525 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_525-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_526 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_526-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_527 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_527-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_528 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_528-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_529 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_529-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_52 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_52-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_530 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_530-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_531 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_531-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_532 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_532-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_533 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_533-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_534 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_534-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_535 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_535-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_536 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_536-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_537 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_537-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_538 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_538-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_539 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_539-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_53 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_53-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_540 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_540-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_541 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_541-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_542 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_542-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_543 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_543-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_544 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_544-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_545 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_545-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_546 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_546-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_547 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_547-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_548 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_548-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_549 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_549-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_54 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_54-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_550 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_550-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_551 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_551-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_552 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_552-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_553 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_553-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_554 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_554-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_555 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_555-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_556 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_556-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_557 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_557-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_558 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_558-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_559 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_559-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_55 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_55-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_560 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_560-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_561 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_561-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_562 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_562-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_563 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_563-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_564 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_564-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_565 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_565-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_566 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_566-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_567 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_567-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_568 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_568-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_569 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_569-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_56 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_56-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_570 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_570-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_571 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_571-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_572 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_572-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_573 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_573-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_574 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_574-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_575 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_575-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_576 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_576-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_577 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_577-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_578 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_578-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_579 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_579-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_57 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_57-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_580 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_580-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_581 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_581-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_582 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_582-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_583 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_583-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_584 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_584-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_585 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_585-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_586 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_586-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_587 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_587-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_588 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_588-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_589 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_589-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_58 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_58-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_590 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_590-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_591 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_591-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_592 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_592-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_593 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_593-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_594 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_594-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_595 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_595-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_596 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_596-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_597 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_597-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_598 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_598-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_599 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_599-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_59 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_59-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_5 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_5-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_600 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_600-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_601 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_601-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_602 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_602-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_603 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_603-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_604 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_604-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_605 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_605-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_606 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_606-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_607 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_607-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_608 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_608-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_609 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_609-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_60 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_60-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_610 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_610-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_611 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_611-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_612 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_612-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_613 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_613-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_614 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_614-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_615 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_615-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_616 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_616-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_617 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_617-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_618 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_618-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_619 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_619-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_61 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_61-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_620 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_620-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_621 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_621-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_622 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_622-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_623 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_623-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_624 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_624-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_625 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_625-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_626 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_626-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_627 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_627-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_628 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_628-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_629 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_629-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_62 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_62-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_630 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_630-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_631 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_631-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_632 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_632-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_633 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_633-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_634 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_634-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_635 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_635-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_636 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_636-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_637 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_637-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_638 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_638-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_639 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_639-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_63 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_63-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_640 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_640-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_641 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_641-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_642 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_642-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_643 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_643-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_644 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_644-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_645 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_645-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_646 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_646-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_647 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_647-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_648 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_648-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_649 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_649-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_64 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_64-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_650 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_650-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_651 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_651-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_652 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_652-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_653 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_653-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_654 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_654-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_655 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_655-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_656 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_656-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_657 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_657-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_658 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_658-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_659 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_659-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_65 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_65-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_660 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_660-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_661 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_661-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_662 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_662-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_663 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_663-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_664 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_664-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_665 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_665-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_666 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_666-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_667 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_667-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_668 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_668-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_669 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_669-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_66 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_66-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_670 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_670-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_671 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_671-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_672 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_672-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_673 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_673-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_674 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_674-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_675 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_675-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_676 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_676-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_677 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_677-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_678 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_678-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_679 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_679-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_67 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_67-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_680 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_680-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_681 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_681-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_682 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_682-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_683 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_683-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_684 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_684-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_685 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_685-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_686 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_686-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_687 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_687-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_688 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_688-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_689 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_689-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_68 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_68-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_690 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_690-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_691 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_691-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_692 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_692-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_693 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_693-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_694 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_694-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_695 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_695-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_696 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_696-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_697 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_697-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_698 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_698-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_699 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_699-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_69 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_69-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_6 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_6-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_700 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_700-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_701 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_701-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_702 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_702-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_703 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_703-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_704 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_704-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_705 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_705-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_706 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_706-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_707 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_707-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_708 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_708-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_709 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_709-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_70 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_70-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_710 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_710-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_711 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_711-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_712 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_712-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_713 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_713-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_714 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_714-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_715 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_715-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_716 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_716-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_717 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_717-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_718 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_718-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_719 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_719-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_71 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_71-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_720 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_720-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_721 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_721-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_722 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_722-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_723 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_723-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_724 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_724-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_725 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_725-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_726 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_726-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_727 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_727-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_728 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_728-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_729 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_729-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_72 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_72-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_730 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_730-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_731 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_731-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_732 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_732-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_733 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_733-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_734 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_734-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_735 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_735-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_736 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_736-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_737 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_737-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_738 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_738-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_739 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_739-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_73 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_73-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_740 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_740-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_741 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_741-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_742 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_742-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_743 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_743-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_744 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_744-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_745 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_745-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_746 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_746-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_747 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_747-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_748 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_748-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_749 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_749-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_74 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_74-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_750 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_750-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_751 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_751-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_752 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_752-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_753 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_753-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_754 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_754-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_755 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_755-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_756 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_756-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_757 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_757-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_758 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_758-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_759 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_759-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_75 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_75-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_760 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_760-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_761 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_761-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_762 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_762-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_763 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_763-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_764 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_764-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_765 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_765-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_766 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_766-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_767 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_767-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_768 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_768-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_769 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_769-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_76 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_76-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_770 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_770-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_771 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_771-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_772 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_772-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_773 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_773-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_774 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_774-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_775 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_775-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_776 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_776-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_777 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_777-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_778 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_778-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_779 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_779-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_77 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_77-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_780 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_780-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_781 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_781-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_782 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_782-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_783 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_783-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_784 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_784-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_785 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_785-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_786 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_786-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_787 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_787-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_788 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_788-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_789 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_789-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_78 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_78-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_790 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_790-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_791 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_791-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_792 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_792-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_793 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_793-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_794 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_794-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_795 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_795-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_796 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_796-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_797 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_797-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_798 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_798-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_799 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_799-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_79 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_79-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_7 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_7-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_800 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_800-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_801 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_801-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_802 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_802-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_803 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_803-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_804 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_804-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_805 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_805-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_806 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_806-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_807 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_807-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_808 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_808-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_809 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_809-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_80 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_80-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_810 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_810-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_811 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_811-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_812 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_812-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_813 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_813-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_814 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_814-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_815 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_815-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_816 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_816-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_817 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_817-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_818 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_818-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_819 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_819-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_81 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_81-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_820 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_820-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_821 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_821-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_822 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_822-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_823 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_823-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_824 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_824-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_825 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_825-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_826 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_826-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_827 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_827-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_828 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_828-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_829 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_829-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_82 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_82-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_830 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_830-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_831 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_831-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_832 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_832-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_833 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_833-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_834 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_834-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_835 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_835-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_836 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_836-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_837 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_837-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_838 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_838-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_839 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_839-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_83 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_83-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_840 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_840-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_841 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_841-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_842 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_842-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_843 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_843-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_844 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_844-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_845 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_845-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_846 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_846-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_847 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_847-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_848 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_848-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_849 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_849-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_84 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_84-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_850 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_850-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_851 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_851-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_852 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_852-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_853 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_853-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_854 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_854-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_855 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_855-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_856 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_856-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_857 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_857-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_858 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_858-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_859 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_859-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_85 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_85-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_860 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_860-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_861 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_861-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_862 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_862-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_863 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_863-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_864 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_864-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_865 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_865-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_866 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_866-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_867 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_867-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_868 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_868-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_869 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_869-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_86 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_86-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_870 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_870-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_871 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_871-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_872 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_872-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_873 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_873-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_874 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_874-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_875 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_875-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_876 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_876-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_877 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_877-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_878 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_878-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_879 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_879-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_87 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_87-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_880 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_880-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_881 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_881-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_882 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_882-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_883 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_883-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_884 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_884-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_885 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_885-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_886 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_886-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_887 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_887-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_888 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_888-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_889 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_889-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_88 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_88-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_890 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_890-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_891 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_891-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_892 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_892-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_893 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_893-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_894 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_894-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_895 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_895-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_896 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_896-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_897 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_897-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_898 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_898-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_899 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_899-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_89 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_89-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_8 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_8-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_900 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_900-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_901 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_901-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_902 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_902-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_903 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_903-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_904 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_904-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_905 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_905-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_906 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_906-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_907 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_907-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_908 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_908-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_909 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_909-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_90 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_90-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_910 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_910-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_911 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_911-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_912 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_912-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_913 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_913-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_914 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_914-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_915 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_915-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_916 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_916-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_917 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_917-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_918 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_918-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_919 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_919-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_91 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_91-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_920 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_920-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_921 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_921-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_922 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_922-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_923 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_923-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_924 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_924-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_925 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_925-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_926 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_926-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_927 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_927-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_928 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_928-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_929 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_929-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_92 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_92-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_930 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_930-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_931 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_931-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_932 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_932-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_933 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_933-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_934 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_934-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_935 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_935-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_936 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_936-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_937 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_937-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_938 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_938-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_939 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_939-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_93 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_93-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_940 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_940-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_941 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_941-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_942 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_942-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_943 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_943-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_944 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_944-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_945 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_945-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_946 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_946-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_947 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_947-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_948 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_948-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_949 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_949-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_94 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_94-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_950 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_950-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_951 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_951-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_952 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_952-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_953 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_953-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_954 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_954-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_955 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_955-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_956 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_956-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_957 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_957-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_958 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_958-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_959 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_959-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_95 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_95-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_960 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_960-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_961 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_961-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_962 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_962-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_963 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_963-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_964 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_964-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_965 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_965-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_966 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_966-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_967 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_967-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_968 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_968-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_969 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_969-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_96 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_96-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_970 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_970-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_971 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_971-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_972 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_972-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_973 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_973-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_974 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_974-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_975 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_975-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_976 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_976-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_977 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_977-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_978 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_978-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_979 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_979-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_97 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_97-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_980 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_980-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_981 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_981-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_982 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_982-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_983 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_983-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_984 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_984-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_985 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_985-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_986 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_986-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_987 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_987-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_988 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_988-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_989 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_989-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_98 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_98-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_990 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_990-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_991 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_991-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_992 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_992-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_993 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_993-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_994 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_994-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_995 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_995-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_996 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_996-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_997 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_997-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_998 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_998-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_999 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_999-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_99 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_99-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i fio1_2_fast5_pass/PAI41168_pass_9b7373b8_9 -s fio1_2_fast5_pass/PAI41168_pass_9b7373b8_9-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_0 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_0-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1000 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1000-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1001 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1001-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1002 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1002-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1003 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1003-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1004 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1004-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1005 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1005-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1006 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1006-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1007 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1007-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1008 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1008-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1009 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1009-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_100 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_100-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1010 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1010-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1011 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1011-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1012 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1012-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1013 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1013-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1014 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1014-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1015 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1015-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1016 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1016-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1017 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1017-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1018 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1018-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1019 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1019-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_101 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_101-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1020 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1020-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1021 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1021-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1022 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1022-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1023 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1023-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1024 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1024-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1025 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1025-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1026 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1026-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1027 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1027-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1028 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1028-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1029 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1029-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_102 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_102-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1030 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1030-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1031 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1031-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1032 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1032-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1033 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1033-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1034 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1034-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1035 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1035-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1036 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1036-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1037 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1037-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1038 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1038-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1039 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1039-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_103 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_103-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1040 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1040-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1041 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1041-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1042 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1042-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1043 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1043-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1044 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1044-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1045 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1045-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1046 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1046-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1047 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1047-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1048 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1048-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1049 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1049-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_104 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_104-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1050 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1050-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1051 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1051-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1052 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1052-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1053 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1053-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1054 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1054-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1055 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1055-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1056 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1056-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1057 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1057-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1058 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1058-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1059 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1059-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_105 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_105-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1060 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1060-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1061 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1061-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1062 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1062-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1063 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1063-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1064 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1064-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1065 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1065-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1066 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1066-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1067 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1067-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1068 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1068-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1069 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1069-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_106 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_106-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1070 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1070-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1071 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1071-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1072 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1072-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1073 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1073-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1074 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1074-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1075 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1075-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1076 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1076-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1077 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1077-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1078 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1078-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1079 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1079-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_107 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_107-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1080 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1080-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1081 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1081-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1082 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1082-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1083 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1083-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1084 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1084-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1085 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1085-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1086 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1086-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1087 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1087-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1088 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1088-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1089 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1089-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_108 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_108-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1090 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1090-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1091 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1091-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1092 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1092-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1093 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1093-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1094 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1094-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1095 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1095-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1096 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1096-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1097 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1097-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1098 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1098-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1099 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1099-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_109 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_109-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_10 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_10-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1100 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1100-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1101 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1101-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1102 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1102-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1103 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1103-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1104 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1104-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1105 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1105-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1106 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1106-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1107 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1107-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1108 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1108-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1109 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1109-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_110 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_110-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1110 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1110-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1111 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1111-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1112 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1112-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1113 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1113-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1114 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1114-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1115 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1115-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1116 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1116-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1117 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1117-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1118 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1118-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1119 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1119-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_111 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_111-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1120 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1120-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1121 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1121-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1122 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1122-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1123 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1123-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1124 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1124-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1125 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1125-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1126 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1126-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1127 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1127-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1128 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1128-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1129 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1129-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_112 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_112-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1130 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1130-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1131 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1131-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1132 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1132-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1133 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1133-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1134 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1134-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1135 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1135-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1136 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1136-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1137 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1137-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1138 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1138-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1139 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1139-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_113 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_113-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1140 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1140-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1141 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1141-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1142 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1142-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1143 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1143-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1144 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1144-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1145 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1145-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1146 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1146-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1147 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1147-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1148 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1148-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1149 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1149-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_114 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_114-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1150 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1150-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1151 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1151-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1152 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1152-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1153 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1153-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1154 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1154-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1155 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1155-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1156 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1156-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1157 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1157-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1158 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1158-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1159 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1159-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_115 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_115-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1160 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1160-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1161 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1161-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1162 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1162-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1163 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1163-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1164 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1164-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1165 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1165-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1166 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1166-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1167 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1167-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1168 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1168-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1169 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1169-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_116 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_116-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1170 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1170-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1171 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1171-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1172 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1172-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1173 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1173-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1174 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1174-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1175 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1175-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1176 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1176-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1177 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1177-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1178 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1178-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1179 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1179-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_117 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_117-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1180 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1180-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1181 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1181-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1182 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1182-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1183 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1183-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1184 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1184-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1185 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1185-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1186 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1186-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1187 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1187-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1188 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1188-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1189 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1189-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_118 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_118-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1190 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1190-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1191 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1191-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1192 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1192-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1193 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1193-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1194 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1194-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1195 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1195-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1196 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1196-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1197 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1197-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1198 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1198-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1199 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1199-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_119 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_119-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_11 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_11-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1200 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1200-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1201 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1201-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1202 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1202-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1203 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1203-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1204 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1204-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1205 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1205-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1206 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1206-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1207 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1207-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1208 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1208-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1209 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1209-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_120 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_120-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1210 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1210-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1211 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1211-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1212 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1212-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1213 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1213-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1214 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1214-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1215 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1215-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1216 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1216-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1217 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1217-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1218 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1218-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1219 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1219-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_121 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_121-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1220 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1220-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1221 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1221-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1222 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1222-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1223 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1223-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1224 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1224-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1225 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1225-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1226 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1226-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1227 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1227-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1228 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1228-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1229 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1229-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_122 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_122-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1230 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1230-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1231 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1231-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1232 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1232-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1233 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1233-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1234 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1234-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1235 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1235-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1236 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1236-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1237 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1237-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1238 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1238-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1239 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1239-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_123 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_123-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1240 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1240-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1241 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1241-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1242 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1242-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1243 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1243-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1244 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1244-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1245 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1245-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1246 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1246-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1247 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1247-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1248 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1248-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1249 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1249-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_124 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_124-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1250 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1250-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1251 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1251-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1252 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1252-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1253 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1253-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1254 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1254-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1255 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1255-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1256 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1256-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1257 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1257-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1258 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1258-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1259 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1259-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_125 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_125-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1260 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1260-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1261 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1261-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1262 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1262-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1263 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1263-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1264 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1264-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1265 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1265-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1266 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1266-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1267 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1267-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1268 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1268-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1269 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1269-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_126 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_126-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1270 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1270-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1271 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1271-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1272 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1272-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1273 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1273-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1274 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1274-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1275 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1275-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1276 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1276-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1277 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1277-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1278 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1278-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1279 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1279-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_127 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_127-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1280 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1280-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1281 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1281-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1282 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1282-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1283 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1283-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1284 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1284-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1285 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1285-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1286 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1286-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1287 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1287-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1288 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1288-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1289 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1289-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_128 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_128-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1290 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1290-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1291 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1291-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1292 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1292-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1293 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1293-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1294 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1294-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1295 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1295-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1296 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1296-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1297 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1297-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1298 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1298-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1299 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1299-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_129 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_129-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_12 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_12-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1300 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1300-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1301 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1301-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1302 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1302-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1303 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1303-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1304 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1304-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1305 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1305-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1306 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1306-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1307 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1307-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1308 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1308-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1309 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1309-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_130 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_130-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1310 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1310-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1311 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1311-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1312 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1312-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1313 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1313-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1314 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1314-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1315 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1315-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1316 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1316-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1317 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1317-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1318 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1318-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1319 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1319-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_131 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_131-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1320 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1320-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1321 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1321-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1322 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1322-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1323 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1323-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1324 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1324-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1325 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1325-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1326 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1326-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1327 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1327-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1328 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1328-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1329 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1329-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_132 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_132-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1330 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1330-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1331 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1331-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1332 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1332-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1333 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1333-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1334 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1334-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1335 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1335-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1336 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1336-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1337 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1337-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1338 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1338-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1339 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1339-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_133 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_133-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1340 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1340-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1341 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1341-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1342 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1342-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1343 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1343-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1344 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1344-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1345 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1345-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1346 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1346-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1347 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1347-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1348 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1348-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1349 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1349-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_134 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_134-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1350 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1350-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1351 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1351-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1352 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1352-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1353 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1353-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1354 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1354-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1355 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1355-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1356 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1356-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1357 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1357-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1358 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1358-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1359 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1359-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_135 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_135-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1360 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1360-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1361 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1361-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1362 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1362-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1363 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1363-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1364 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1364-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1365 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1365-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1366 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1366-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1367 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1367-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1368 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1368-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1369 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1369-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_136 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_136-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1370 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1370-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1371 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1371-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1372 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1372-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1373 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1373-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1374 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1374-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1375 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1375-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1376 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1376-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1377 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1377-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1378 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1378-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1379 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1379-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_137 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_137-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1380 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1380-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1381 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1381-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1382 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1382-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1383 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1383-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1384 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1384-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1385 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1385-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1386 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1386-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1387 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1387-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1388 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1388-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1389 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1389-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_138 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_138-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1390 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1390-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1391 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1391-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1392 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1392-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1393 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1393-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1394 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1394-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1395 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1395-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1396 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1396-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1397 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1397-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1398 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1398-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1399 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1399-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_139 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_139-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_13 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_13-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1400 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1400-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1401 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1401-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1402 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1402-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1403 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1403-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1404 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1404-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1405 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1405-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1406 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1406-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1407 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1407-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1408 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1408-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1409 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1409-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_140 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_140-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1410 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1410-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1411 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1411-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1412 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1412-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1413 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1413-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1414 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1414-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1415 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1415-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1416 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1416-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1417 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1417-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1418 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1418-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1419 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1419-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_141 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_141-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1420 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1420-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1421 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1421-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1422 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1422-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1423 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1423-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1424 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1424-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1425 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1425-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1426 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1426-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1427 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1427-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1428 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1428-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1429 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1429-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_142 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_142-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1430 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1430-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1431 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1431-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1432 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1432-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1433 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1433-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1434 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1434-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1435 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1435-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1436 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1436-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1437 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1437-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1438 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1438-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1439 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1439-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_143 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_143-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1440 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1440-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1441 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1441-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1442 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1442-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1443 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1443-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1444 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1444-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1445 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1445-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1446 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1446-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1447 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1447-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1448 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1448-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1449 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1449-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_144 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_144-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1450 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1450-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1451 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1451-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1452 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1452-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1453 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1453-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1454 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1454-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1455 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1455-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1456 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1456-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1457 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1457-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1458 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1458-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1459 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1459-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_145 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_145-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1460 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1460-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1461 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1461-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1462 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1462-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1463 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1463-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1464 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1464-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1465 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1465-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1466 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1466-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1467 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1467-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1468 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1468-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1469 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1469-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_146 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_146-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1470 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1470-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1471 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1471-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1472 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1472-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1473 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1473-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1474 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1474-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1475 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1475-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1476 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1476-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1477 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1477-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1478 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1478-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1479 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1479-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_147 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_147-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1480 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1480-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1481 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1481-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1482 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1482-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1483 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1483-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1484 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1484-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1485 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1485-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1486 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1486-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1487 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1487-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1488 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1488-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1489 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1489-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_148 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_148-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1490 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1490-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1491 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1491-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1492 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1492-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1493 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1493-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1494 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1494-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1495 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1495-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1496 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1496-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1497 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1497-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1498 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1498-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1499 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1499-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_149 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_149-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_14 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_14-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1500 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1500-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1501 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1501-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1502 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1502-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1503 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1503-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1504 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1504-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1505 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1505-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1506 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1506-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1507 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1507-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1508 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1508-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1509 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1509-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_150 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_150-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1510 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1510-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1511 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1511-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1512 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1512-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1513 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1513-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1514 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1514-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1515 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1515-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1516 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1516-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1517 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1517-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1518 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1518-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1519 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1519-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_151 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_151-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1520 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1520-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1521 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1521-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1522 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1522-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1523 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1523-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1524 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1524-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1525 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1525-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1526 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1526-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1527 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1527-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1528 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1528-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1529 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1529-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_152 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_152-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1530 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1530-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1531 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1531-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1532 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1532-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1533 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1533-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1534 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1534-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1535 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1535-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1536 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1536-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1537 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1537-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1538 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1538-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1539 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1539-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_153 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_153-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1540 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1540-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1541 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1541-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1542 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1542-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1543 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1543-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1544 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1544-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1545 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1545-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1546 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1546-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1547 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1547-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1548 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1548-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1549 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1549-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_154 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_154-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1550 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1550-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1551 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1551-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1552 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1552-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1553 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1553-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1554 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1554-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1555 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1555-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1556 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1556-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1557 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1557-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1558 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1558-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1559 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1559-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_155 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_155-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1560 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1560-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1561 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1561-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1562 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1562-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1563 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1563-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1564 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1564-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1565 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1565-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1566 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1566-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1567 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1567-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1568 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1568-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1569 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1569-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_156 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_156-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1570 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1570-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1571 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1571-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1572 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1572-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1573 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1573-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1574 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1574-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1575 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1575-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1576 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1576-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1577 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1577-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1578 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1578-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1579 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1579-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_157 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_157-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1580 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1580-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1581 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1581-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1582 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1582-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1583 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1583-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1584 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1584-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1585 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1585-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1586 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1586-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1587 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1587-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1588 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1588-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1589 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1589-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_158 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_158-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1590 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1590-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1591 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1591-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1592 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1592-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1593 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1593-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1594 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1594-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1595 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1595-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1596 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1596-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1597 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1597-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1598 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1598-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1599 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1599-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_159 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_159-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_15 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_15-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1600 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1600-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1601 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1601-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1602 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1602-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1603 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1603-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1604 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1604-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1605 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1605-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1606 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1606-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1607 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1607-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1608 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1608-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1609 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1609-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_160 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_160-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1610 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1610-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1611 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1611-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1612 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1612-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1613 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1613-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1614 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1614-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1615 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1615-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1616 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1616-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1617 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1617-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1618 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1618-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1619 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1619-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_161 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_161-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1620 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1620-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1621 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1621-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1622 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1622-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1623 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1623-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1624 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1624-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1625 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1625-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1626 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1626-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1627 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1627-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1628 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1628-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1629 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1629-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_162 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_162-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1630 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1630-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1631 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1631-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1632 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1632-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1633 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1633-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1634 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1634-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1635 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1635-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1636 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1636-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1637 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1637-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1638 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1638-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1639 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1639-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_163 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_163-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1640 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1640-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1641 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1641-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1642 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1642-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1643 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1643-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1644 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1644-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1645 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1645-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1646 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1646-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1647 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1647-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1648 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1648-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1649 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1649-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_164 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_164-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1650 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1650-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1651 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1651-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1652 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1652-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1653 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1653-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1654 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1654-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1655 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1655-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1656 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1656-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1657 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1657-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1658 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1658-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1659 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1659-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_165 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_165-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1660 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1660-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1661 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1661-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1662 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1662-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1663 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1663-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1664 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1664-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1665 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1665-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1666 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1666-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1667 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1667-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1668 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1668-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1669 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1669-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_166 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_166-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1670 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1670-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1671 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1671-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1672 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1672-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1673 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1673-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1674 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1674-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1675 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1675-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1676 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1676-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1677 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1677-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1678 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1678-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1679 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1679-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_167 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_167-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1680 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1680-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1681 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1681-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1682 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1682-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1683 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1683-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1684 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1684-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1685 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1685-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1686 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1686-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1687 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1687-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1688 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1688-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1689 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1689-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_168 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_168-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1690 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1690-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1691 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1691-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1692 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1692-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1693 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1693-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1694 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1694-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1695 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1695-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1696 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1696-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1697 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1697-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1698 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1698-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1699 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1699-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_169 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_169-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_16 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_16-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1700 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1700-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1701 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1701-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1702 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1702-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1703 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1703-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1704 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1704-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1705 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1705-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1706 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1706-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1707 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1707-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1708 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1708-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1709 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1709-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_170 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_170-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1710 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1710-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1711 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1711-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1712 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1712-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1713 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1713-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1714 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1714-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1715 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1715-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1716 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1716-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1717 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1717-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1718 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1718-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1719 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1719-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_171 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_171-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1720 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1720-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1721 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1721-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1722 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1722-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1723 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1723-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1724 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1724-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1725 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1725-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1726 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1726-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1727 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1727-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1728 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1728-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1729 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1729-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_172 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_172-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1730 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1730-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1731 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1731-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1732 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1732-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1733 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1733-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1734 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1734-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1735 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1735-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1736 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1736-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1737 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1737-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1738 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1738-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1739 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1739-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_173 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_173-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_174 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_174-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_175 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_175-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_176 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_176-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_177 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_177-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_178 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_178-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_179 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_179-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_17 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_17-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_180 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_180-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_181 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_181-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_182 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_182-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_183 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_183-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_184 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_184-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_185 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_185-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_186 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_186-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_187 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_187-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_188 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_188-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_189 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_189-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_18 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_18-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_190 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_190-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_191 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_191-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_192 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_192-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_193 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_193-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_194 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_194-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_195 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_195-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_196 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_196-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_197 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_197-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_198 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_198-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_199 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_199-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_19 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_19-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_1 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_1-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_200 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_200-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_201 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_201-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_202 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_202-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_203 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_203-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_204 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_204-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_205 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_205-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_206 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_206-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_207 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_207-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_208 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_208-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_209 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_209-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_20 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_20-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_210 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_210-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_211 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_211-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_212 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_212-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_213 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_213-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_214 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_214-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_215 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_215-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_216 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_216-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_217 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_217-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_218 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_218-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_219 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_219-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_21 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_21-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_220 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_220-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_221 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_221-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_222 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_222-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_223 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_223-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_224 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_224-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_225 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_225-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_226 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_226-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_227 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_227-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_228 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_228-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_229 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_229-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_22 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_22-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_230 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_230-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_231 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_231-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_232 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_232-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_233 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_233-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_234 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_234-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_235 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_235-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_236 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_236-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_237 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_237-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_238 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_238-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_239 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_239-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_23 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_23-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_240 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_240-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_241 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_241-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_242 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_242-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_243 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_243-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_244 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_244-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_245 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_245-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_246 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_246-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_247 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_247-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_248 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_248-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_249 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_249-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_24 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_24-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_250 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_250-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_251 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_251-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_252 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_252-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_253 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_253-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_254 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_254-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_255 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_255-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_256 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_256-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_257 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_257-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_258 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_258-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_259 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_259-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_25 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_25-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_260 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_260-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_261 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_261-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_262 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_262-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_263 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_263-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_264 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_264-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_265 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_265-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_266 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_266-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_267 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_267-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_268 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_268-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_269 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_269-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_26 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_26-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_270 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_270-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_271 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_271-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_272 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_272-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_273 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_273-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_274 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_274-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_275 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_275-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_276 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_276-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_277 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_277-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_278 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_278-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_279 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_279-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_27 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_27-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_280 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_280-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_281 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_281-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_282 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_282-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_283 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_283-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_284 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_284-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_285 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_285-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_286 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_286-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_287 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_287-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_288 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_288-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_289 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_289-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_28 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_28-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_290 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_290-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_291 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_291-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_292 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_292-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_293 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_293-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_294 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_294-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_295 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_295-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_296 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_296-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_297 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_297-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_298 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_298-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_299 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_299-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_29 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_29-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_2 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_2-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_300 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_300-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_301 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_301-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_302 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_302-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_303 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_303-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_304 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_304-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_305 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_305-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_306 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_306-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_307 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_307-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_308 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_308-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_309 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_309-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_30 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_30-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_310 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_310-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_311 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_311-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_312 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_312-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_313 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_313-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_314 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_314-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_315 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_315-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_316 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_316-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_317 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_317-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_318 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_318-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_319 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_319-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_31 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_31-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_320 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_320-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_321 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_321-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_322 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_322-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_323 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_323-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_324 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_324-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_325 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_325-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_326 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_326-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_327 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_327-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_328 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_328-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_329 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_329-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_32 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_32-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_330 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_330-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_331 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_331-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_332 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_332-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_333 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_333-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_334 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_334-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_335 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_335-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_336 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_336-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_337 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_337-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_338 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_338-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_339 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_339-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_33 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_33-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_340 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_340-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_341 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_341-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_342 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_342-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_343 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_343-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_344 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_344-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_345 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_345-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_346 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_346-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_347 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_347-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_348 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_348-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_349 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_349-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_34 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_34-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_350 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_350-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_351 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_351-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_352 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_352-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_353 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_353-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_354 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_354-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_355 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_355-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_356 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_356-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_357 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_357-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_358 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_358-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_359 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_359-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_35 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_35-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_360 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_360-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_361 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_361-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_362 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_362-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_363 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_363-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_364 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_364-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_365 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_365-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_366 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_366-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_367 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_367-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_368 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_368-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_369 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_369-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_36 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_36-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_370 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_370-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_371 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_371-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_372 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_372-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_373 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_373-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_374 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_374-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_375 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_375-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_376 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_376-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_377 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_377-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_378 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_378-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_379 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_379-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_37 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_37-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_380 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_380-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_381 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_381-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_382 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_382-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_383 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_383-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_384 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_384-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_385 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_385-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_386 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_386-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_387 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_387-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_388 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_388-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_389 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_389-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_38 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_38-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_390 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_390-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_391 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_391-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_392 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_392-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_393 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_393-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_394 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_394-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_395 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_395-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_396 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_396-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_397 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_397-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_398 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_398-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_399 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_399-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_39 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_39-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_3 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_3-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_400 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_400-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_401 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_401-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_402 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_402-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_403 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_403-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_404 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_404-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_405 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_405-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_406 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_406-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_407 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_407-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_408 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_408-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_409 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_409-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_40 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_40-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_410 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_410-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_411 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_411-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_412 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_412-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_413 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_413-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_414 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_414-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_415 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_415-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_416 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_416-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_417 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_417-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_418 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_418-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_419 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_419-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_41 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_41-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_420 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_420-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_421 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_421-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_422 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_422-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_423 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_423-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_424 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_424-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_425 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_425-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_426 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_426-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_427 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_427-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_428 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_428-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_429 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_429-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_42 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_42-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_430 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_430-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_431 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_431-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_432 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_432-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_433 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_433-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_434 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_434-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_435 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_435-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_436 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_436-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_437 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_437-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_438 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_438-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_439 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_439-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_43 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_43-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_440 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_440-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_441 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_441-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_442 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_442-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_443 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_443-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_444 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_444-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_445 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_445-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_446 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_446-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_447 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_447-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_448 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_448-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_449 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_449-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_44 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_44-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_450 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_450-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_451 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_451-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_452 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_452-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_453 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_453-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_454 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_454-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_455 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_455-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_456 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_456-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_457 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_457-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_458 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_458-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_459 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_459-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_45 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_45-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_460 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_460-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_461 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_461-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_462 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_462-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_463 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_463-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_464 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_464-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_465 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_465-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_466 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_466-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_467 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_467-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_468 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_468-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_469 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_469-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_46 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_46-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_470 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_470-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_471 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_471-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_472 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_472-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_473 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_473-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_474 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_474-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_475 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_475-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_476 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_476-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_477 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_477-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_478 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_478-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_479 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_479-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_47 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_47-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_480 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_480-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_481 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_481-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_482 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_482-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_483 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_483-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_484 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_484-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_485 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_485-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_486 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_486-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_487 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_487-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_488 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_488-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_489 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_489-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_48 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_48-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_490 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_490-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_491 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_491-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_492 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_492-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_493 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_493-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_494 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_494-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_495 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_495-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_496 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_496-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_497 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_497-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_498 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_498-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_499 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_499-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_49 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_49-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_4 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_4-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_500 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_500-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_501 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_501-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_502 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_502-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_503 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_503-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_504 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_504-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_505 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_505-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_506 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_506-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_507 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_507-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_508 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_508-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_509 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_509-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_50 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_50-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_510 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_510-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_511 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_511-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_512 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_512-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_513 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_513-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_514 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_514-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_515 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_515-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_516 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_516-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_517 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_517-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_518 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_518-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_519 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_519-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_51 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_51-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_520 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_520-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_521 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_521-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_522 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_522-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_523 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_523-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_524 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_524-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_525 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_525-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_526 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_526-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_527 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_527-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_528 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_528-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_529 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_529-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_52 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_52-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_530 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_530-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_531 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_531-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_532 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_532-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_533 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_533-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_534 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_534-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_535 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_535-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_536 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_536-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_537 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_537-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_538 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_538-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_539 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_539-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_53 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_53-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_540 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_540-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_541 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_541-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_542 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_542-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_543 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_543-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_544 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_544-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_545 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_545-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_546 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_546-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_547 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_547-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_548 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_548-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_549 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_549-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_54 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_54-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_550 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_550-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_551 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_551-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_552 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_552-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_553 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_553-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_554 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_554-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_555 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_555-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_556 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_556-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_557 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_557-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_558 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_558-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_559 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_559-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_55 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_55-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_560 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_560-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_561 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_561-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_562 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_562-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_563 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_563-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_564 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_564-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_565 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_565-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_566 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_566-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_567 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_567-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_568 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_568-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_569 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_569-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_56 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_56-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_570 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_570-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_571 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_571-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_572 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_572-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_573 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_573-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_574 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_574-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_575 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_575-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_576 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_576-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_577 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_577-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_578 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_578-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_579 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_579-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_57 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_57-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_580 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_580-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_581 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_581-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_582 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_582-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_583 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_583-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_584 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_584-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_585 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_585-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_586 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_586-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_587 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_587-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_588 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_588-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_589 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_589-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_58 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_58-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_590 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_590-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_591 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_591-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_592 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_592-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_593 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_593-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_594 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_594-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_595 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_595-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_596 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_596-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_597 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_597-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_598 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_598-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_599 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_599-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_59 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_59-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_5 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_5-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_600 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_600-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_601 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_601-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_602 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_602-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_603 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_603-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_604 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_604-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_605 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_605-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_606 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_606-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_607 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_607-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_608 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_608-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_609 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_609-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_60 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_60-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_610 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_610-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_611 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_611-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_612 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_612-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_613 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_613-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_614 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_614-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_615 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_615-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_616 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_616-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_617 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_617-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_618 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_618-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_619 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_619-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_61 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_61-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_620 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_620-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_621 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_621-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_622 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_622-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_623 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_623-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_624 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_624-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_625 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_625-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_626 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_626-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_627 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_627-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_628 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_628-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_629 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_629-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_62 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_62-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_630 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_630-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_631 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_631-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_632 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_632-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_633 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_633-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_634 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_634-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_635 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_635-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_636 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_636-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_637 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_637-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_638 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_638-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_639 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_639-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_63 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_63-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_640 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_640-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_641 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_641-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_642 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_642-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_643 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_643-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_644 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_644-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_645 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_645-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_646 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_646-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_647 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_647-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_648 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_648-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_649 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_649-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_64 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_64-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_650 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_650-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_651 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_651-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_652 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_652-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_653 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_653-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_654 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_654-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_655 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_655-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_656 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_656-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_657 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_657-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_658 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_658-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_659 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_659-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_65 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_65-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_660 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_660-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_661 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_661-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_662 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_662-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_663 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_663-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_664 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_664-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_665 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_665-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_666 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_666-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_667 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_667-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_668 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_668-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_669 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_669-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_66 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_66-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_670 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_670-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_671 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_671-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_672 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_672-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_673 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_673-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_674 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_674-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_675 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_675-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_676 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_676-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_677 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_677-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_678 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_678-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_679 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_679-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_67 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_67-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_680 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_680-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_681 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_681-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_682 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_682-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_683 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_683-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_684 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_684-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_685 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_685-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_686 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_686-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_687 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_687-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_688 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_688-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_689 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_689-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_68 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_68-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_690 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_690-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_691 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_691-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_692 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_692-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_693 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_693-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_694 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_694-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_695 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_695-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_696 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_696-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_697 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_697-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_698 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_698-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_699 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_699-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_69 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_69-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_6 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_6-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_700 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_700-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_701 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_701-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_702 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_702-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_703 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_703-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_704 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_704-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_705 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_705-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_706 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_706-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_707 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_707-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_708 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_708-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_709 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_709-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_70 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_70-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_710 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_710-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_711 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_711-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_712 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_712-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_713 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_713-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_714 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_714-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_715 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_715-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_716 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_716-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_717 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_717-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_718 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_718-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_719 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_719-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_71 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_71-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_720 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_720-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_721 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_721-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_722 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_722-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_723 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_723-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_724 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_724-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_725 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_725-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_726 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_726-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_727 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_727-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_728 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_728-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_729 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_729-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_72 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_72-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_730 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_730-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_731 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_731-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_732 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_732-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_733 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_733-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_734 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_734-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_735 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_735-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_736 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_736-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_737 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_737-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_738 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_738-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_739 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_739-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_73 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_73-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_740 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_740-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_741 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_741-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_742 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_742-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_743 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_743-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_744 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_744-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_745 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_745-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_746 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_746-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_747 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_747-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_748 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_748-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_749 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_749-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_74 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_74-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_750 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_750-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_751 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_751-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_752 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_752-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_753 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_753-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_754 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_754-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_755 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_755-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_756 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_756-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_757 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_757-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_758 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_758-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_759 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_759-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_75 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_75-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_760 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_760-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_761 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_761-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_762 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_762-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_763 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_763-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_764 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_764-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_765 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_765-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_766 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_766-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_767 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_767-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_768 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_768-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_769 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_769-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_76 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_76-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_770 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_770-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_771 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_771-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_772 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_772-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_773 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_773-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_774 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_774-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_775 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_775-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_776 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_776-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_777 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_777-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_778 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_778-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_779 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_779-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_77 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_77-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_780 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_780-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_781 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_781-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_782 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_782-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_783 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_783-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_784 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_784-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_785 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_785-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_786 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_786-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_787 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_787-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_788 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_788-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_789 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_789-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_78 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_78-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_790 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_790-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_791 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_791-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_792 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_792-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_793 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_793-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_794 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_794-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_795 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_795-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_796 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_796-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_797 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_797-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_798 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_798-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_799 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_799-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_79 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_79-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_7 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_7-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_800 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_800-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_801 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_801-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_802 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_802-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_803 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_803-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_804 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_804-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_805 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_805-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_806 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_806-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_807 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_807-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_808 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_808-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_809 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_809-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_80 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_80-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_810 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_810-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_811 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_811-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_812 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_812-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_813 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_813-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_814 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_814-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_815 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_815-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_816 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_816-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_817 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_817-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_818 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_818-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_819 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_819-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_81 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_81-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_820 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_820-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_821 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_821-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_822 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_822-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_823 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_823-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_824 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_824-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_825 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_825-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_826 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_826-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_827 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_827-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_828 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_828-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_829 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_829-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_82 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_82-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_830 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_830-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_831 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_831-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_832 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_832-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_833 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_833-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_834 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_834-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_835 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_835-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_836 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_836-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_837 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_837-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_838 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_838-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_839 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_839-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_83 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_83-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_840 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_840-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_841 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_841-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_842 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_842-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_843 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_843-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_844 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_844-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_845 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_845-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_846 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_846-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_847 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_847-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_848 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_848-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_849 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_849-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_84 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_84-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_850 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_850-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_851 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_851-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_852 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_852-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_853 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_853-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_854 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_854-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_855 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_855-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_856 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_856-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_857 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_857-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_858 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_858-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_859 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_859-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_85 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_85-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_860 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_860-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_861 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_861-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_862 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_862-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_863 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_863-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_864 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_864-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_865 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_865-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_866 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_866-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_867 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_867-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_868 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_868-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_869 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_869-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_86 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_86-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_870 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_870-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_871 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_871-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_872 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_872-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_873 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_873-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_874 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_874-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_875 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_875-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_876 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_876-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_877 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_877-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_878 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_878-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_879 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_879-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_87 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_87-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_880 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_880-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_881 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_881-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_882 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_882-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_883 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_883-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_884 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_884-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_885 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_885-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_886 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_886-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_887 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_887-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_888 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_888-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_889 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_889-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_88 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_88-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_890 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_890-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_891 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_891-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_892 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_892-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_893 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_893-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_894 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_894-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_895 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_895-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_896 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_896-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_897 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_897-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_898 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_898-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_899 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_899-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_89 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_89-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_8 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_8-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_900 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_900-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_901 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_901-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_902 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_902-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_903 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_903-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_904 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_904-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_905 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_905-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_906 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_906-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_907 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_907-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_908 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_908-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_909 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_909-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_90 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_90-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_910 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_910-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_911 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_911-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_912 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_912-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_913 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_913-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_914 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_914-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_915 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_915-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_916 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_916-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_917 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_917-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_918 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_918-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_919 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_919-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_91 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_91-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_920 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_920-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_921 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_921-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_922 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_922-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_923 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_923-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_924 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_924-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_925 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_925-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_926 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_926-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_927 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_927-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_928 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_928-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_929 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_929-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_92 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_92-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_930 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_930-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_931 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_931-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_932 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_932-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_933 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_933-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_934 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_934-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_935 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_935-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_936 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_936-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_937 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_937-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_938 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_938-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_939 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_939-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_93 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_93-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_940 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_940-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_941 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_941-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_942 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_942-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_943 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_943-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_944 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_944-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_945 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_945-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_946 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_946-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_947 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_947-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_948 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_948-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_949 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_949-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_94 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_94-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_950 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_950-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_951 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_951-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_952 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_952-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_953 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_953-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_954 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_954-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_955 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_955-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_956 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_956-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_957 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_957-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_958 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_958-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_959 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_959-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_95 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_95-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_960 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_960-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_961 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_961-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_962 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_962-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_963 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_963-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_964 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_964-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_965 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_965-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_966 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_966-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_967 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_967-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_968 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_968-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_969 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_969-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_96 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_96-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_970 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_970-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_971 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_971-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_972 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_972-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_973 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_973-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_974 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_974-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_975 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_975-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_976 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_976-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_977 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_977-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_978 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_978-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_979 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_979-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_97 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_97-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_980 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_980-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_981 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_981-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_982 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_982-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_983 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_983-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_984 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_984-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_985 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_985-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_986 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_986-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_987 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_987-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_988 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_988-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_989 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_989-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_98 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_98-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_990 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_990-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_991 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_991-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_992 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_992-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_993 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_993-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_994 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_994-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_995 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_995-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_996 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_996-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_997 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_997-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_998 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_998-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_999 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_999-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_99 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_99-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i wt_fast5_pass/PAI18168_pass_2bfb8df7_9 -s wt_fast5_pass/PAI18168_pass_2bfb8df7_9-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none