python ~/code/bedRPKMfromBAM.py L2499-22Rv1_Bcl6.2x36mers.hg38-male.unique.dedup.MACS2_peaks.narrowPeak 0 L2499-22Rv1_Bcl6.2x36mers.hg38-male.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes L2499-22Rv1_Bcl6.2x36mers.hg38-male.unique.dedup.MACS2_peaks.RPM -RPM -unique.dedupBAM &
python ~/code/bedRPKMfromBAM.py L2500-22Rv1_Bcl6.2x36mers.hg38-male.unique.dedup.MACS2_peaks.narrowPeak 0 L2500-22Rv1_Bcl6.2x36mers.hg38-male.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes L2500-22Rv1_Bcl6.2x36mers.hg38-male.unique.dedup.MACS2_peaks.RPM -RPM -unique.dedupBAM &
python ~/code/bedRPKMfromBAM.py L2501-22Rv1_BRD4.2x36mers.hg38-male.unique.dedup.MACS2_peaks.narrowPeak 0 L2501-22Rv1_BRD4.2x36mers.hg38-male.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes L2501-22Rv1_BRD4.2x36mers.hg38-male.unique.dedup.MACS2_peaks.RPM -RPM -unique.dedupBAM &
python ~/code/bedRPKMfromBAM.py L2502-22Rv1_BRD4.2x36mers.hg38-male.unique.dedup.MACS2_peaks.narrowPeak 0 L2502-22Rv1_BRD4.2x36mers.hg38-male.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes L2502-22Rv1_BRD4.2x36mers.hg38-male.unique.dedup.MACS2_peaks.RPM -RPM -unique.dedupBAM &