Invoking:
  getsize ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.06087
Invoking:
  fasta-most -min 50 < ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.108752
Invoking:
  fasta-center -dna -len 100 < ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa 1> ./seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.186397
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 2 ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa ./background
Finished invoke:
  name: bg  status: 0  time: 0.03702
Invoking:
  meme ./seqs-centered -oc meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 15 -bfile ./background -dna -searchsize 100000 -time 2919 -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 1225.316681
Invoking:
  streme --verbosity 1 --oc streme_out -dna --p ./seqs-centered --minw 6 --maxw 15 --time 5667 --order 2 --thresh 0.05 --totallength 4000000
Finished invoke:
  name: streme  status: 0  time: 1648.238363
Invoking:
  centrimo -seqlen 200 -verbosity 1 -oc centrimo_out -bfile ./background -score 5.0 -ethresh 10.0 ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa meme_out/meme.xml streme_out/streme.xml db/MOUSE/uniprobe_mouse.meme db/JASPAR/JASPAR2022_CORE_vertebrates_non-redundant_v2.meme db/EUKARYOTE/jolma2013.meme
Finished invoke:
  name: centrimo  status: 0  time: 243.631473
Invoking:
  tomtom -verbosity 1 -oc meme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc meme_out/meme.xml db/MOUSE/uniprobe_mouse.meme db/JASPAR/JASPAR2022_CORE_vertebrates_non-redundant_v2.meme db/EUKARYOTE/jolma2013.meme
Finished invoke:
  name: meme_tomtom  status: 0  time: 6.431059
Invoking:
  tomtom -verbosity 1 -oc streme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc streme_out/streme.xml db/MOUSE/uniprobe_mouse.meme db/JASPAR/JASPAR2022_CORE_vertebrates_non-redundant_v2.meme db/EUKARYOTE/jolma2013.meme
Finished invoke:
  name: streme_tomtom  status: 0  time: 25.72532
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 ./combined.meme ./combined.meme 1> ./motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 4.299131
Invoking:
  spamo -verbosity 1 -oc spamo_out_1 -bgfile ./background -keepprimary -primary VTGACTCA ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa meme_out/meme.xml meme_out/meme.xml streme_out/streme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.144478
Invoking:
  spamo -verbosity 1 -oc spamo_out_2 -bgfile ./background -keepprimary -primary 2-TTGMKCAA ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa streme_out/streme.xml meme_out/meme.xml streme_out/streme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.151011
Invoking:
  spamo -verbosity 1 -oc spamo_out_3 -bgfile ./background -keepprimary -primary 3-ACATTCCW ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa streme_out/streme.xml meme_out/meme.xml streme_out/streme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.15805
Invoking:
  spamo -verbosity 1 -oc spamo_out_4 -bgfile ./background -keepprimary -primary 4-CCCCRCCCC ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa streme_out/streme.xml meme_out/meme.xml streme_out/streme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.154162
Invoking:
  spamo -verbosity 1 -oc spamo_out_5 -bgfile ./background -keepprimary -primary CSSSSCCGCSSSSSS ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa meme_out/meme.xml meme_out/meme.xml streme_out/streme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.158795
Invoking:
  spamo -verbosity 1 -oc spamo_out_6 -bgfile ./background -keepprimary -primary 6-AGAAACA ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa streme_out/streme.xml meme_out/meme.xml streme_out/streme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.161515
Invoking:
  spamo -verbosity 1 -oc spamo_out_7 -bgfile ./background -keepprimary -primary 8-AGGAAR ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa streme_out/streme.xml meme_out/meme.xml streme_out/streme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.154583
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc fimo_out_1 --bgfile ./background --motif VTGACTCA meme_out/meme.xml ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa
Finished invoke:
  name: fimo1  status: 0  time: 1.295393
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc fimo_out_2 --bgfile ./background --motif 2-TTGMKCAA streme_out/streme.xml ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa
Finished invoke:
  name: fimo2  status: 0  time: 1.284397
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc fimo_out_3 --bgfile ./background --motif 3-ACATTCCW streme_out/streme.xml ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa
Finished invoke:
  name: fimo3  status: 0  time: 1.290961
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc fimo_out_4 --bgfile ./background --motif 4-CCCCRCCCC streme_out/streme.xml ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa
Finished invoke:
  name: fimo4  status: 0  time: 1.326872
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc fimo_out_5 --bgfile ./background --motif CSSSSCCGCSSSSSS meme_out/meme.xml ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa
Finished invoke:
  name: fimo5  status: 0  time: 1.376308
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc fimo_out_6 --bgfile ./background --motif 6-AGAAACA streme_out/streme.xml ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa
Finished invoke:
  name: fimo6  status: 0  time: 1.284189
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc fimo_out_7 --bgfile ./background --motif 8-AGGAAR streme_out/streme.xml ./IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa
Finished invoke:
  name: fimo7  status: 0  time: 1.268585
Writing output
Invoking:
  meme-chip_html_to_tsv ./meme-chip.html ./summary.tsv "meme-chip -oc . -time 240 -ccut 100 -dna -order 2 -minw 6 -maxw 15 -db db/MOUSE/uniprobe_mouse.meme -db db/JASPAR/JASPAR2022_CORE_vertebrates_non-redundant_v2.meme -db db/EUKARYOTE/jolma2013.meme -meme-mod zoops -meme-nmotifs 3 -meme-searchsize 100000 -streme-pvt 0.05 -streme-totallength 4000000 -centrimo-score 5.0 -centrimo-ethresh 10.0 IFI16_D1_chip.MACS2_peaks.narrowPeak.chr-vs-BL-outersection1.fa" 5.4.1 "Sat Aug 21 19\:23\:23 2021 -0700"
Finished invoke:
  name: summary  status: 0  time: 0.244486
Done
