python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_repliATAC_rep1-GSM3681552.2x36mers.chrM.plus.counts.wig Nascent_repliATAC_rep1-GSM3681552.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_repliATAC_rep1-GSM3681552.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_repliATAC_rep2-GSM3681553.2x36mers.chrM.plus.counts.wig Nascent_repliATAC_rep2-GSM3681553.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_repliATAC_rep2-GSM3681553.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_repliATAC_rep3-GSM3681554.2x36mers.chrM.plus.counts.wig Nascent_repliATAC_rep3-GSM3681554.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_repliATAC_rep3-GSM3681554.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 30m_Mature_repliATAC_rep1-GSM3681555.2x36mers.chrM.plus.counts.wig 30m_Mature_repliATAC_rep1-GSM3681555.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 30m_Mature_repliATAC_rep1-GSM3681555.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 30m_Mature_repliATAC_rep2-GSM3681556.2x36mers.chrM.plus.counts.wig 30m_Mature_repliATAC_rep2-GSM3681556.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 30m_Mature_repliATAC_rep2-GSM3681556.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 30m_Mature_repliATAC_rep3-GSM3681557.2x36mers.chrM.plus.counts.wig 30m_Mature_repliATAC_rep3-GSM3681557.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 30m_Mature_repliATAC_rep3-GSM3681557.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 1h_Mature_repliATAC_rep1-GSM3681558.2x36mers.chrM.plus.counts.wig 1h_Mature_repliATAC_rep1-GSM3681558.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 1h_Mature_repliATAC_rep1-GSM3681558.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 1h_Mature_repliATAC_rep2-GSM3681559.2x36mers.chrM.plus.counts.wig 1h_Mature_repliATAC_rep2-GSM3681559.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 1h_Mature_repliATAC_rep2-GSM3681559.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 1h_Mature_repliATAC_rep3-GSM3681560.2x36mers.chrM.plus.counts.wig 1h_Mature_repliATAC_rep3-GSM3681560.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 1h_Mature_repliATAC_rep3-GSM3681560.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_repliATAC_rep1-GSM3681561.2x36mers.chrM.plus.counts.wig 2h_Mature_repliATAC_rep1-GSM3681561.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_repliATAC_rep1-GSM3681561.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_repliATAC_rep2-GSM3681562.2x36mers.chrM.plus.counts.wig 2h_Mature_repliATAC_rep2-GSM3681562.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_repliATAC_rep2-GSM3681562.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_repliATAC_rep3-GSM3681563.2x36mers.chrM.plus.counts.wig 2h_Mature_repliATAC_rep3-GSM3681563.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_repliATAC_rep3-GSM3681563.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Steady_state_rep1-GSM3681564.2x36mers.chrM.plus.counts.wig Steady_state_rep1-GSM3681564.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Steady_state_rep1-GSM3681564.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Steady_state_rep2-GSM3681565.2x36mers.chrM.plus.counts.wig Steady_state_rep2-GSM3681565.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Steady_state_rep2-GSM3681565.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Steady_state_rep3-GSM3681566.2x36mers.chrM.plus.counts.wig Steady_state_rep3-GSM3681566.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Steady_state_rep3-GSM3681566.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_DMSO_repliATAC_rep1-GSM3681567.2x36mers.chrM.plus.counts.wig Nascent_DMSO_repliATAC_rep1-GSM3681567.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_DMSO_repliATAC_rep1-GSM3681567.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_DMSO_repliATAC_rep2-GSM3681568.2x36mers.chrM.plus.counts.wig Nascent_DMSO_repliATAC_rep2-GSM3681568.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_DMSO_repliATAC_rep2-GSM3681568.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_DMSO_repliATAC_rep3-GSM3681569.2x36mers.chrM.plus.counts.wig Nascent_DMSO_repliATAC_rep3-GSM3681569.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_DMSO_repliATAC_rep3-GSM3681569.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_DRB_repliATAC_rep1-GSM3681570.2x36mers.chrM.plus.counts.wig Nascent_DRB_repliATAC_rep1-GSM3681570.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_DRB_repliATAC_rep1-GSM3681570.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_DRB_repliATAC_rep2-GSM3681571.2x36mers.chrM.plus.counts.wig Nascent_DRB_repliATAC_rep2-GSM3681571.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_DRB_repliATAC_rep2-GSM3681571.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_DRB_repliATAC_rep3-GSM3681572.2x36mers.chrM.plus.counts.wig Nascent_DRB_repliATAC_rep3-GSM3681572.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_DRB_repliATAC_rep3-GSM3681572.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_triptolide_repliATAC_rep1-GSM3681573.2x36mers.chrM.plus.counts.wig Nascent_triptolide_repliATAC_rep1-GSM3681573.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_triptolide_repliATAC_rep1-GSM3681573.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_triptolide_repliATAC_rep2-GSM3681574.2x36mers.chrM.plus.counts.wig Nascent_triptolide_repliATAC_rep2-GSM3681574.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_triptolide_repliATAC_rep2-GSM3681574.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_triptolide_repliATAC_rep3-GSM3681575.2x36mers.chrM.plus.counts.wig Nascent_triptolide_repliATAC_rep3-GSM3681575.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_triptolide_repliATAC_rep3-GSM3681575.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_DMSO_repliATAC_rep1-GSM3681576.2x36mers.chrM.plus.counts.wig 2h_Mature_DMSO_repliATAC_rep1-GSM3681576.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_DMSO_repliATAC_rep1-GSM3681576.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_DMSO_repliATAC_rep2-GSM3681577.2x36mers.chrM.plus.counts.wig 2h_Mature_DMSO_repliATAC_rep2-GSM3681577.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_DMSO_repliATAC_rep2-GSM3681577.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_DMSO_repliATAC_rep3-GSM3681578.2x36mers.chrM.plus.counts.wig 2h_Mature_DMSO_repliATAC_rep3-GSM3681578.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_DMSO_repliATAC_rep3-GSM3681578.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_DRB_repliATAC_rep1-GSM3681579.2x36mers.chrM.plus.counts.wig 2h_Mature_DRB_repliATAC_rep1-GSM3681579.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_DRB_repliATAC_rep1-GSM3681579.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_DRB_repliATAC_rep2-GSM3681580.2x36mers.chrM.plus.counts.wig 2h_Mature_DRB_repliATAC_rep2-GSM3681580.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_DRB_repliATAC_rep2-GSM3681580.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_DRB_repliATAC_rep3-GSM3681581.2x36mers.chrM.plus.counts.wig 2h_Mature_DRB_repliATAC_rep3-GSM3681581.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_DRB_repliATAC_rep3-GSM3681581.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_triptolide_repliATAC_rep1-GSM3681582.2x36mers.chrM.plus.counts.wig 2h_Mature_triptolide_repliATAC_rep1-GSM3681582.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_triptolide_repliATAC_rep1-GSM3681582.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_triptolide_repliATAC_rep2-GSM3681583.2x36mers.chrM.plus.counts.wig 2h_Mature_triptolide_repliATAC_rep2-GSM3681583.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_triptolide_repliATAC_rep2-GSM3681583.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_triptolide_repliATAC_rep3-GSM3681584.2x36mers.chrM.plus.counts.wig 2h_Mature_triptolide_repliATAC_rep3-GSM3681584.2x36mers.chrM.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_triptolide_repliATAC_rep3-GSM3681584.2x36mers.chrM.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_repliATAC_rep1-GSM3681552.2x36mers.chrM.dedup.plus.counts.wig Nascent_repliATAC_rep1-GSM3681552.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_repliATAC_rep1-GSM3681552.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_repliATAC_rep2-GSM3681553.2x36mers.chrM.dedup.plus.counts.wig Nascent_repliATAC_rep2-GSM3681553.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_repliATAC_rep2-GSM3681553.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_repliATAC_rep3-GSM3681554.2x36mers.chrM.dedup.plus.counts.wig Nascent_repliATAC_rep3-GSM3681554.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_repliATAC_rep3-GSM3681554.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 30m_Mature_repliATAC_rep1-GSM3681555.2x36mers.chrM.dedup.plus.counts.wig 30m_Mature_repliATAC_rep1-GSM3681555.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 30m_Mature_repliATAC_rep1-GSM3681555.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 30m_Mature_repliATAC_rep2-GSM3681556.2x36mers.chrM.dedup.plus.counts.wig 30m_Mature_repliATAC_rep2-GSM3681556.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 30m_Mature_repliATAC_rep2-GSM3681556.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 30m_Mature_repliATAC_rep3-GSM3681557.2x36mers.chrM.dedup.plus.counts.wig 30m_Mature_repliATAC_rep3-GSM3681557.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 30m_Mature_repliATAC_rep3-GSM3681557.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 1h_Mature_repliATAC_rep1-GSM3681558.2x36mers.chrM.dedup.plus.counts.wig 1h_Mature_repliATAC_rep1-GSM3681558.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 1h_Mature_repliATAC_rep1-GSM3681558.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 1h_Mature_repliATAC_rep2-GSM3681559.2x36mers.chrM.dedup.plus.counts.wig 1h_Mature_repliATAC_rep2-GSM3681559.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 1h_Mature_repliATAC_rep2-GSM3681559.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 1h_Mature_repliATAC_rep3-GSM3681560.2x36mers.chrM.dedup.plus.counts.wig 1h_Mature_repliATAC_rep3-GSM3681560.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 1h_Mature_repliATAC_rep3-GSM3681560.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_repliATAC_rep1-GSM3681561.2x36mers.chrM.dedup.plus.counts.wig 2h_Mature_repliATAC_rep1-GSM3681561.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_repliATAC_rep1-GSM3681561.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_repliATAC_rep2-GSM3681562.2x36mers.chrM.dedup.plus.counts.wig 2h_Mature_repliATAC_rep2-GSM3681562.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_repliATAC_rep2-GSM3681562.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_repliATAC_rep3-GSM3681563.2x36mers.chrM.dedup.plus.counts.wig 2h_Mature_repliATAC_rep3-GSM3681563.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_repliATAC_rep3-GSM3681563.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Steady_state_rep1-GSM3681564.2x36mers.chrM.dedup.plus.counts.wig Steady_state_rep1-GSM3681564.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Steady_state_rep1-GSM3681564.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Steady_state_rep2-GSM3681565.2x36mers.chrM.dedup.plus.counts.wig Steady_state_rep2-GSM3681565.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Steady_state_rep2-GSM3681565.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Steady_state_rep3-GSM3681566.2x36mers.chrM.dedup.plus.counts.wig Steady_state_rep3-GSM3681566.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Steady_state_rep3-GSM3681566.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_DMSO_repliATAC_rep1-GSM3681567.2x36mers.chrM.dedup.plus.counts.wig Nascent_DMSO_repliATAC_rep1-GSM3681567.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_DMSO_repliATAC_rep1-GSM3681567.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_DMSO_repliATAC_rep2-GSM3681568.2x36mers.chrM.dedup.plus.counts.wig Nascent_DMSO_repliATAC_rep2-GSM3681568.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_DMSO_repliATAC_rep2-GSM3681568.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_DMSO_repliATAC_rep3-GSM3681569.2x36mers.chrM.dedup.plus.counts.wig Nascent_DMSO_repliATAC_rep3-GSM3681569.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_DMSO_repliATAC_rep3-GSM3681569.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_DRB_repliATAC_rep1-GSM3681570.2x36mers.chrM.dedup.plus.counts.wig Nascent_DRB_repliATAC_rep1-GSM3681570.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_DRB_repliATAC_rep1-GSM3681570.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_DRB_repliATAC_rep2-GSM3681571.2x36mers.chrM.dedup.plus.counts.wig Nascent_DRB_repliATAC_rep2-GSM3681571.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_DRB_repliATAC_rep2-GSM3681571.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_DRB_repliATAC_rep3-GSM3681572.2x36mers.chrM.dedup.plus.counts.wig Nascent_DRB_repliATAC_rep3-GSM3681572.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_DRB_repliATAC_rep3-GSM3681572.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_triptolide_repliATAC_rep1-GSM3681573.2x36mers.chrM.dedup.plus.counts.wig Nascent_triptolide_repliATAC_rep1-GSM3681573.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_triptolide_repliATAC_rep1-GSM3681573.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_triptolide_repliATAC_rep2-GSM3681574.2x36mers.chrM.dedup.plus.counts.wig Nascent_triptolide_repliATAC_rep2-GSM3681574.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_triptolide_repliATAC_rep2-GSM3681574.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py Nascent_triptolide_repliATAC_rep3-GSM3681575.2x36mers.chrM.dedup.plus.counts.wig Nascent_triptolide_repliATAC_rep3-GSM3681575.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 Nascent_triptolide_repliATAC_rep3-GSM3681575.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_DMSO_repliATAC_rep1-GSM3681576.2x36mers.chrM.dedup.plus.counts.wig 2h_Mature_DMSO_repliATAC_rep1-GSM3681576.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_DMSO_repliATAC_rep1-GSM3681576.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_DMSO_repliATAC_rep2-GSM3681577.2x36mers.chrM.dedup.plus.counts.wig 2h_Mature_DMSO_repliATAC_rep2-GSM3681577.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_DMSO_repliATAC_rep2-GSM3681577.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_DMSO_repliATAC_rep3-GSM3681578.2x36mers.chrM.dedup.plus.counts.wig 2h_Mature_DMSO_repliATAC_rep3-GSM3681578.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_DMSO_repliATAC_rep3-GSM3681578.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_DRB_repliATAC_rep1-GSM3681579.2x36mers.chrM.dedup.plus.counts.wig 2h_Mature_DRB_repliATAC_rep1-GSM3681579.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_DRB_repliATAC_rep1-GSM3681579.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_DRB_repliATAC_rep2-GSM3681580.2x36mers.chrM.dedup.plus.counts.wig 2h_Mature_DRB_repliATAC_rep2-GSM3681580.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_DRB_repliATAC_rep2-GSM3681580.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_DRB_repliATAC_rep3-GSM3681581.2x36mers.chrM.dedup.plus.counts.wig 2h_Mature_DRB_repliATAC_rep3-GSM3681581.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_DRB_repliATAC_rep3-GSM3681581.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_triptolide_repliATAC_rep1-GSM3681582.2x36mers.chrM.dedup.plus.counts.wig 2h_Mature_triptolide_repliATAC_rep1-GSM3681582.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_triptolide_repliATAC_rep1-GSM3681582.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_triptolide_repliATAC_rep2-GSM3681583.2x36mers.chrM.dedup.plus.counts.wig 2h_Mature_triptolide_repliATAC_rep2-GSM3681583.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_triptolide_repliATAC_rep2-GSM3681583.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &
python /oak/stanford/groups/akundaje/marinovg/code/wigPlusMinusRatio.py 2h_Mature_triptolide_repliATAC_rep3-GSM3681584.2x36mers.chrM.dedup.plus.counts.wig 2h_Mature_triptolide_repliATAC_rep3-GSM3681584.2x36mers.chrM.dedup.minus.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/mm10/chrM.chrom.sizes 1000 10 50 1 2h_Mature_triptolide_repliATAC_rep3-GSM3681584.2x36mers.chrM.dedup.PlusMinusRatio_1000bp_min50_pc1 &