python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf CTG_pH7.1-GSM1470703/SRR1542931.circ_35bp.v0.a.bowtie.circJuncsOnly.reads CTG_pH7.1-GSM1470703/SRR1542931.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf CTG_pH7.2-GSM1470704/SRR1542932.circ_35bp.v0.a.bowtie.circJuncsOnly.reads CTG_pH7.2-GSM1470704/SRR1542932.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf CTG_pH7.3-GSM1470705/SRR1542933.circ_35bp.v0.a.bowtie.circJuncsOnly.reads CTG_pH7.3-GSM1470705/SRR1542933.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf CTG_pH8.1-GSM1470706/SRR1542934.circ_35bp.v0.a.bowtie.circJuncsOnly.reads CTG_pH8.1-GSM1470706/SRR1542934.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf CTG_pH8.2-GSM1470707/SRR1542935.circ_35bp.v0.a.bowtie.circJuncsOnly.reads CTG_pH8.2-GSM1470707/SRR1542935.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf CTG_pH8.3-GSM1470708/SRR1542936.circ_35bp.v0.a.bowtie.circJuncsOnly.reads CTG_pH8.3-GSM1470708/SRR1542936.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf PLK_pH7.1-GSM1470697/SRR1542925.circ_35bp.v0.a.bowtie.circJuncsOnly.reads PLK_pH7.1-GSM1470697/SRR1542925.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf PLK_pH7.2-GSM1470698/SRR1542926.circ_35bp.v0.a.bowtie.circJuncsOnly.reads PLK_pH7.2-GSM1470698/SRR1542926.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf PLK_pH7.3-GSM1470699/SRR1542927.circ_35bp.v0.a.bowtie.circJuncsOnly.reads PLK_pH7.3-GSM1470699/SRR1542927.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf PLK_pH8.1-GSM1470700/SRR1542928.circ_35bp.v0.a.bowtie.circJuncsOnly.reads PLK_pH8.1-GSM1470700/SRR1542928.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf PLK_pH8.2-GSM1470701/SRR1542929.circ_35bp.v0.a.bowtie.circJuncsOnly.reads PLK_pH8.2-GSM1470701/SRR1542929.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf PLK_pH8.3-GSM1470702/SRR1542930.circ_35bp.v0.a.bowtie.circJuncsOnly.reads PLK_pH8.3-GSM1470702/SRR1542930.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf RH_pH7.1-GSM1470691/SRR1542919.circ_35bp.v0.a.bowtie.circJuncsOnly.reads RH_pH7.1-GSM1470691/SRR1542919.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf RH_pH7.2-GSM1470692/SRR1542920.circ_35bp.v0.a.bowtie.circJuncsOnly.reads RH_pH7.2-GSM1470692/SRR1542920.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf RH_pH7.3-GSM1470693/SRR1542921.circ_35bp.v0.a.bowtie.circJuncsOnly.reads RH_pH7.3-GSM1470693/SRR1542921.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf RH_pH8.1-GSM1470694/SRR1542922.circ_35bp.v0.a.bowtie.circJuncsOnly.reads RH_pH8.1-GSM1470694/SRR1542922.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf RH_pH8.2-GSM1470695/SRR1542923.circ_35bp.v0.a.bowtie.circJuncsOnly.reads RH_pH8.2-GSM1470695/SRR1542923.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices
python ~/code/transcriptome/circularRNAReadsToBackSplicesFasta.py ~/genomes/Apicomplexa/Toxoplasma_gondii/sequence/Toxoplasma_gondii.ToxoDB-7.1.20.fa ~/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf RH_pH8.3-GSM1470696/SRR1542924.circ_35bp.v0.a.bowtie.circJuncsOnly.reads RH_pH8.3-GSM1470696/SRR1542924.circ_35bp.v0.a.bowtie.circJuncsOnly.backSplices