/oak/stanford/groups/akundaje/marinovg/programs/bcl2fastq2-v2.20/export/bin/bcl2fastq -p 8 --use-bases-mask Y*,I8,nnnnnnnn,Y* --mask-short-adapter-reads 0 --barcode-mismatches 1 --ignore-missing-filter --min-log-level WARNING --minimum-trimmed-read-length 75 --runfolder-dir 180602_NS500418_0868_AHMNFVBGX5 --output-dir 180602_BaseCalls --stats-dir 180602_BaseCalls/bcl2fastq-stats --reports-dir 180602_BaseCalls/bcl2fastq-reports --sample-sheet sampleSheet_HiChip1_20180602.TTTCCGGT.csv &
/oak/stanford/groups/akundaje/marinovg/programs/bcl2fastq2-v2.20/export/bin/bcl2fastq -p 8 --use-bases-mask Y*,I8,nnnnnnnn,Y* --mask-short-adapter-reads 0 --barcode-mismatches 1 --ignore-missing-filter --min-log-level WARNING --minimum-trimmed-read-length 75 --runfolder-dir 180603_NS500418_0869_AHMNGYBGX5 --output-dir 180603_BaseCalls --stats-dir 180603_BaseCalls/bcl2fastq-stats --reports-dir 180603_BaseCalls/bcl2fastq-reports --sample-sheet sampleSheet_HiChip2_20180603.TTTCCGGT.csv &