## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[JA27-8738-Foxg1-Input.2x36mers.hg19-male.unique.bam] OUTPUT=JA27-8738-Foxg1-Input.2x36mers.hg19-male.unique.dedup.bam METRICS_FILE=JA27-8738-Foxg1-Input.2x36mers.hg19-male.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 02 22:10:24 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	8860312	4855306	0	39731	17229	0.004484	1734676974

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.001943
2.0	1.998782
3.0	2.990542
4.0	3.977249
5.0	4.95893
6.0	5.935609
7.0	6.907312
8.0	7.874064
9.0	8.835891
10.0	9.792818
11.0	10.744869
12.0	11.69207
13.0	12.634446
14.0	13.57202
15.0	14.504817
16.0	15.432862
17.0	16.356179
18.0	17.274792
19.0	18.188725
20.0	19.098002
21.0	20.002646
22.0	20.902681
23.0	21.79813
24.0	22.689018
25.0	23.575367
26.0	24.4572
27.0	25.33454
28.0	26.207411
29.0	27.075834
30.0	27.939833
31.0	28.799431
32.0	29.654648
33.0	30.505509
34.0	31.352035
35.0	32.194248
36.0	33.03217
37.0	33.865823
38.0	34.695229
39.0	35.520409
40.0	36.341385
41.0	37.158179
42.0	37.970811
43.0	38.779303
44.0	39.583676
45.0	40.383951
46.0	41.180149
47.0	41.97229
48.0	42.760396
49.0	43.544486
50.0	44.324582
51.0	45.100703
52.0	45.87287
53.0	46.641103
54.0	47.405423
55.0	48.165848
56.0	48.922399
57.0	49.675095
58.0	50.423957
59.0	51.169004
60.0	51.910254
61.0	52.647729
62.0	53.381446
63.0	54.111425
64.0	54.837684
65.0	55.560244
66.0	56.279123
67.0	56.994339
68.0	57.705911
69.0	58.413858
70.0	59.118198
71.0	59.81895
72.0	60.516131
73.0	61.209761
74.0	61.899857
75.0	62.586436
76.0	63.269518
77.0	63.94912
78.0	64.62526
79.0	65.297954
80.0	65.967222
81.0	66.633079
82.0	67.295545
83.0	67.954635
84.0	68.610367
85.0	69.262759
86.0	69.911827
87.0	70.557588
88.0	71.200059
89.0	71.839256
90.0	72.475198
91.0	73.107899
92.0	73.737377
93.0	74.363648
94.0	74.986728
95.0	75.606633
96.0	76.223381
97.0	76.836986
98.0	77.447465
99.0	78.054834
100.0	78.659109