## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[JA27-8738-Foxg1-ChIP.2x36mers.hg19-male.unique.bam] OUTPUT=JA27-8738-Foxg1-ChIP.2x36mers.hg19-male.unique.dedup.bam METRICS_FILE=JA27-8738-Foxg1-ChIP.2x36mers.hg19-male.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 02 22:10:24 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	7200119	3710804	0	75093	23561	0.010429	497323413

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.003259
2.0	1.992098
3.0	2.966724
4.0	3.927342
5.0	4.874152
6.0	5.807353
7.0	6.72714
8.0	7.633708
9.0	8.527244
10.0	9.407938
11.0	10.275973
12.0	11.131531
13.0	11.974792
14.0	12.805932
15.0	13.625126
16.0	14.432546
17.0	15.22836
18.0	16.012735
19.0	16.785836
20.0	17.547825
21.0	18.298862
22.0	19.039104
23.0	19.768706
24.0	20.487821
25.0	21.1966
26.0	21.895191
27.0	22.583741
28.0	23.262394
29.0	23.931293
30.0	24.590577
31.0	25.240385
32.0	25.880853
33.0	26.512116
34.0	27.134305
35.0	27.747551
36.0	28.351982
37.0	28.947726
38.0	29.534907
39.0	30.113648
40.0	30.684071
41.0	31.246294
42.0	31.800437
43.0	32.346615
44.0	32.884942
45.0	33.415531
46.0	33.938495
47.0	34.453941
48.0	34.961979
49.0	35.462714
50.0	35.956252
51.0	36.442696
52.0	36.922149
53.0	37.39471
54.0	37.860478
55.0	38.319552
56.0	38.772028
57.0	39.218
58.0	39.657561
59.0	40.090805
60.0	40.517822
61.0	40.9387
62.0	41.35353
63.0	41.762397
64.0	42.165387
65.0	42.562584
66.0	42.954073
67.0	43.339934
68.0	43.72025
69.0	44.095099
70.0	44.46456
71.0	44.82871
72.0	45.187627
73.0	45.541384
74.0	45.890057
75.0	46.233719
76.0	46.57244
77.0	46.906293
78.0	47.235348
79.0	47.559673
80.0	47.879336
81.0	48.194404
82.0	48.504944
83.0	48.811021
84.0	49.112698
85.0	49.410038
86.0	49.703106
87.0	49.99196
88.0	50.276663
89.0	50.557274
90.0	50.833851
91.0	51.106453
92.0	51.375137
93.0	51.639959
94.0	51.900974
95.0	52.158238
96.0	52.411804
97.0	52.661725
98.0	52.908054
99.0	53.150843
100.0	53.390142