## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[JA27-1417-Foxg1-Input.2x36mers.hg19-male.unique.bam] OUTPUT=JA27-1417-Foxg1-Input.2x36mers.hg19-male.unique.dedup.bam METRICS_FILE=JA27-1417-Foxg1-Input.2x36mers.hg19-male.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 02 22:10:24 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	8890538	4503886	0	41831	17707	0.004705	1628759045

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.00199
2.0	1.998526
3.0	2.989637
4.0	3.975353
5.0	4.955703
6.0	5.930716
7.0	6.900422
8.0	7.864849
9.0	8.824026
10.0	9.777982
11.0	10.726744
12.0	11.670342
13.0	12.608804
14.0	13.542157
15.0	14.470429
16.0	15.393648
17.0	16.311841
18.0	17.225036
19.0	18.13326
20.0	19.03654
21.0	19.934903
22.0	20.828375
23.0	21.716984
24.0	22.600756
25.0	23.479716
26.0	24.353892
27.0	25.22331
28.0	26.087994
29.0	26.947972
30.0	27.803268
31.0	28.653908
32.0	29.499918
33.0	30.341322
34.0	31.178146
35.0	32.010415
36.0	32.838153
37.0	33.661385
38.0	34.480136
39.0	35.29443
40.0	36.104292
41.0	36.909745
42.0	37.710813
43.0	38.50752
44.0	39.299891
45.0	40.087948
46.0	40.871715
47.0	41.651216
48.0	42.426474
49.0	43.197511
50.0	43.964351
51.0	44.727017
52.0	45.485531
53.0	46.239916
54.0	46.990194
55.0	47.736389
56.0	48.478521
57.0	49.216613
58.0	49.950688
59.0	50.680766
60.0	51.40687
61.0	52.129022
62.0	52.847243
63.0	53.561553
64.0	54.271976
65.0	54.978531
66.0	55.68124
67.0	56.380123
68.0	57.075203
69.0	57.766498
70.0	58.45403
71.0	59.13782
72.0	59.817887
73.0	60.494253
74.0	61.166936
75.0	61.835958
76.0	62.501338
77.0	63.163095
78.0	63.821251
79.0	64.475823
80.0	65.126833
81.0	65.774298
82.0	66.418239
83.0	67.058675
84.0	67.695625
85.0	68.329107
86.0	68.95914
87.0	69.585744
88.0	70.208937
89.0	70.828738
90.0	71.445165
91.0	72.058236
92.0	72.667969
93.0	73.274384
94.0	73.877498
95.0	74.477328
96.0	75.073893
97.0	75.667211
98.0	76.257299
99.0	76.844175
100.0	77.427856