## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[JA26-1417-Foxg1-ChIP.2x36mers.hg19-male.unique.bam] OUTPUT=JA26-1417-Foxg1-ChIP.2x36mers.hg19-male.unique.dedup.bam METRICS_FILE=JA26-1417-Foxg1-ChIP.2x36mers.hg19-male.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jun 02 22:10:25 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	2230674	1177784	0	115647	30518	0.051844	27693262

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.01332
2.0	1.948218
3.0	2.810764
4.0	3.606557
5.0	4.340763
6.0	5.018149
7.0	5.643111
8.0	6.219707
9.0	6.75168
10.0	7.242483
11.0	7.695302
12.0	8.113078
13.0	8.498522
14.0	8.854135
15.0	9.182228
16.0	9.48493
17.0	9.764205
18.0	10.021867
19.0	10.259588
20.0	10.478912
21.0	10.681262
22.0	10.867953
23.0	11.040195
24.0	11.199107
25.0	11.345721
26.0	11.480988
27.0	11.605787
28.0	11.720928
29.0	11.827158
30.0	11.925167
31.0	12.01559
32.0	12.099016
33.0	12.175986
34.0	12.246998
35.0	12.312515
36.0	12.372962
37.0	12.428731
38.0	12.480183
39.0	12.527654
40.0	12.571451
41.0	12.611858
42.0	12.649138
43.0	12.683534
44.0	12.715267
45.0	12.744544
46.0	12.771556
47.0	12.796477
48.0	12.81947
49.0	12.840683
50.0	12.860254
51.0	12.878311
52.0	12.89497
53.0	12.91034
54.0	12.924521
55.0	12.937604
56.0	12.949674
57.0	12.960811
58.0	12.971086
59.0	12.980565
60.0	12.989311
61.0	12.99738
62.0	13.004824
63.0	13.011693
64.0	13.018029
65.0	13.023876
66.0	13.02927
67.0	13.034246
68.0	13.038838
69.0	13.043074
70.0	13.046982
71.0	13.050588
72.0	13.053914
73.0	13.056984
74.0	13.059815
75.0	13.062428
76.0	13.064838
77.0	13.067062
78.0	13.069114
79.0	13.071007
80.0	13.072753
81.0	13.074365
82.0	13.075851
83.0	13.077223
84.0	13.078488
85.0	13.079656
86.0	13.080733
87.0	13.081727
88.0	13.082643
89.0	13.083489
90.0	13.08427
91.0	13.08499
92.0	13.085654
93.0	13.086267
94.0	13.086833
95.0	13.087354
96.0	13.087836
97.0	13.08828
98.0	13.088689
99.0	13.089067
100.0	13.089416