Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Karpas_250nM726A_T24_1.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Karpas_250nM726A_T24_1.50mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Karpas_250nM726A_T24_2.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Karpas_250nM726A_T24_2.50mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Karpas_250nM726A_T24_3.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Karpas_250nM726A_T24_3.50mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Karpas_250nM726A_T72_1.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Karpas_250nM726A_T72_1.50mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Karpas_250nM726A_T72_2.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Karpas_250nM726A_T72_2.50mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Karpas_250nM726A_T72_3.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Karpas_250nM726A_T72_3.50mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Karpas_DMSO_T72_1.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Karpas_DMSO_T72_1.50mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Karpas_DMSO_T72_2.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Karpas_DMSO_T72_2.50mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Karpas_DMSO_T72_3.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Karpas_DMSO_T72_3.50mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Karpas_Input_250nM726A_T72.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Karpas_Input_250nM726A_T72.50mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Karpas_Input_DMSO.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Karpas_Input_DMSO.50mers.unique.QC