/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --gzip --trim1 --paired OSC_tandem_R1_1-GSM2050823_1.fastq.gz OSC_tandem_R1_1-GSM2050823_2.fastq.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --gzip --trim1 --paired OSC_tandem_R1_2-GSM2050824_1.fastq.gz OSC_tandem_R1_2-GSM2050824_2.fastq.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --gzip --trim1 --paired OSC_tandem_R2_1-GSM2050825_1.fastq.gz OSC_tandem_R2_1-GSM2050825_2.fastq.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --gzip --trim1 --paired OSC_tandem_R2_2-GSM2050826_1.fastq.gz OSC_tandem_R2_2-GSM2050826_2.fastq.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --gzip --trim1 --paired S2_McviPI_R1-GSM2050817_1.fastq.gz  S2_McviPI_R1-GSM2050817_2.fastq.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --gzip --trim1 --paired S2_SssI_R1-GSM2050818_1.fastq.gz S2_SssI_R1-GSM2050818_2.fastq.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --gzip --trim1 --paired S2_tandem_R1_1-GSM2050819_1.fastq.gz S2_tandem_R1_1-GSM2050819_2.fastq.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --gzip --trim1 --paired S2_tandem_R1_2-GSM2050820_1.fastq.gz S2_tandem_R1_2-GSM2050820_2.fastq.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --gzip --trim1 --paired S2_tandem_R2_1-GSM2050821_1.fastq.gz S2_tandem_R2_1-GSM2050821_2.fastq.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --gzip --trim1 --paired S2_tandem_R2_2-GSM2050822_1.fastq.gz S2_tandem_R2_2-GSM2050822_2.fastq.gz