export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bowtie-1.1.0-linux-x86_64/bowtie-build; /oak/stanford/groups/akundaje/marinovg/programs/Bismark-0.18.2/bismark_genome_preparation --bowtie1 --genomic_composition /oak/stanford/groups/akundaje/marinovg/genomes/dm6/bismarck