Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=S2_T0_ATAC-seq_rep1-GSM2521726.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=S2_T0_ATAC-seq_rep1-GSM2521726.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=S2_T0_ATAC-seq_rep2-GSM2521727.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=S2_T0_ATAC-seq_rep2-GSM2521727.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=S2_T0_H3K27ac_ChIP_rep1-GSM2521732.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=S2_T0_H3K27ac_ChIP_rep1-GSM2521732.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=S2_T0_H3K27ac_ChIP_rep2-GSM2521733.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=S2_T0_H3K27ac_ChIP_rep2-GSM2521733.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=S2_T0_H3K27ac_input_rep1-GSM2521738.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=S2_T0_H3K27ac_input_rep1-GSM2521738.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=S2_T0_H3K27ac_input_rep2-GSM2521739.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=S2_T0_H3K27ac_input_rep2-GSM2521739.36mers.unique.QC