/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t S2_T0_ATAC-seq_rep1-GSM2521726.36mers.unique.bam -n S2_T0_ATAC-seq_rep1-GSM2521726.36mers.unique.MACS-2.1.0 -g dm -f BAM 
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t S2_T0_ATAC-seq_rep2-GSM2521727.36mers.unique.bam -n S2_T0_ATAC-seq_rep2-GSM2521727.36mers.unique.MACS-2.1.0 -g dm -f BAM 
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t S2_T0_H3K27ac_ChIP_rep1-GSM2521732.36mers.unique.bam -c S2_T0_H3K27ac_input_rep1-GSM2521738.36mers.unique.bam -n S2_T0_H3K27ac_ChIP_rep1-GSM2521732.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t S2_T0_H3K27ac_ChIP_rep2-GSM2521733.36mers.unique.bam -c S2_T0_H3K27ac_input_rep2-GSM2521739.36mers.unique.bam -n S2_T0_H3K27ac_ChIP_rep2-GSM2521733.36mers.unique.MACS-2.1.0 -g dm -f BAM