Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BioTAP-N-Scm_input_S2_replicate1-GSM1616473.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=BioTAP-N-Scm_input_S2_replicate1-GSM1616473.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BioTAP-N-Scm_input_S2_replicate2-GSM1616475.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=BioTAP-N-Scm_input_S2_replicate2-GSM1616475.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BioTAP-N-Scm_IP_S2_replicate1-GSM1616472.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=BioTAP-N-Scm_IP_S2_replicate1-GSM1616472.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=BioTAP-N-Scm_IP_S2_replicate2-GSM1616474.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=BioTAP-N-Scm_IP_S2_replicate2-GSM1616474.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Pc-C-BioTAP_input_S2_replicate1-GSM1616477.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Pc-C-BioTAP_input_S2_replicate1-GSM1616477.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Pc-C-BioTAP_IP_S2_replicate1-GSM1616476.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Pc-C-BioTAP_IP_S2_replicate1-GSM1616476.36mers.unique.QC