Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=H3K4me3_S2_cells_ChIP-seq_ChIP_Rep1-GSM1217677.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=H3K4me3_S2_cells_ChIP-seq_ChIP_Rep1-GSM1217677.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=H3K4me3_S2_cells_ChIP-seq_ChIP_Rep2-GSM1217678.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=H3K4me3_S2_cells_ChIP-seq_ChIP_Rep2-GSM1217678.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=H3K4me3_S2_cells_ChIP-seq_Input_Rep1-GSM1217675.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=H3K4me3_S2_cells_ChIP-seq_Input_Rep1-GSM1217675.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=H3K4me3_S2_cells_ChIP-seq_Input_Rep2-GSM1217676.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=H3K4me3_S2_cells_ChIP-seq_Input_Rep2-GSM1217676.36mers.unique.QC