/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H3K4me3_S2_cells_ChIP-seq_ChIP_Rep1-GSM1217677.36mers.unique.bam -c H3K4me3_S2_cells_ChIP-seq_Input_Rep1-GSM1217675.36mers.unique.bam -n H3K4me3_S2_cells_ChIP-seq_ChIP_Rep1-GSM1217677.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H3K4me3_S2_cells_ChIP-seq_ChIP_Rep2-GSM1217678.36mers.unique.bam -c H3K4me3_S2_cells_ChIP-seq_Input_Rep2-GSM1217676.36mers.unique.bam -n H3K4me3_S2_cells_ChIP-seq_ChIP_Rep2-GSM1217678.36mers.unique.MACS-2.1.0 -g dm -f BAM