Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=input_control_S2_ChIPSeq_replicate_1-GSM936120.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=input_control_S2_ChIPSeq_replicate_1-GSM936120.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=input_control_S2_ChIPSeq_replicate_2-GSM936121.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=input_control_S2_ChIPSeq_replicate_2-GSM936121.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=input_control_S2-PH_ChIPSeq-GSM936125.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=input_control_S2-PH_ChIPSeq-GSM936125.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=input_mitotic_S2_ChIPSeq_replicate_1-GSM936118.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=input_mitotic_S2_ChIPSeq_replicate_1-GSM936118.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=input_mitotic_S2_ChIPSeq_replicate_2-GSM936119.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=input_mitotic_S2_ChIPSeq_replicate_2-GSM936119.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=input_mitotic_S2-PH_ChIPSeq-GSM936124.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=input_mitotic_S2-PH_ChIPSeq-GSM936124.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=PH_control_S2-PH_ChIPSeq-GSM936123.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=PH_control_S2-PH_ChIPSeq-GSM936123.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=PH_mitotic_S2-PH_ChIPSeq-GSM936122.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=PH_mitotic_S2-PH_ChIPSeq-GSM936122.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=PSC_control_S2_ChIPSeq_replicate_1-GSM936116.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=PSC_control_S2_ChIPSeq_replicate_1-GSM936116.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=PSC_control_S2_ChIPSeq_replicate_2-GSM936117.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=PSC_control_S2_ChIPSeq_replicate_2-GSM936117.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=PSC_mitotic_S2_ChIPSeq_replicate_1-GSM936114.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=PSC_mitotic_S2_ChIPSeq_replicate_1-GSM936114.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=PSC_mitotic_S2_ChIPSeq_replicate_2-GSM936115.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=PSC_mitotic_S2_ChIPSeq_replicate_2-GSM936115.36mers.unique.QC