python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py input_control_S2_ChIPSeq_replicate_1-GSM936120 .36mers.unique.bam SAMstats-input_control_S2_ChIPSeq_replicate_1-GSM936120  -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py input_control_S2_ChIPSeq_replicate_2-GSM936121.36mers.unique.bam SAMstats-input_control_S2_ChIPSeq_replicate_2-GSM936121 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py input_control_S2-PH_ChIPSeq-GSM936125.36mers.unique.bam SAMstats-input_control_S2-PH_ChIPSeq-GSM936125 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py input_mitotic_S2_ChIPSeq_replicate_1-GSM936118.36mers.unique.bam SAMstats-input_mitotic_S2_ChIPSeq_replicate_1-GSM936118 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py input_mitotic_S2_ChIPSeq_replicate_2-GSM936119.36mers.unique.bam SAMstats-input_mitotic_S2_ChIPSeq_replicate_2-GSM936119 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py input_mitotic_S2-PH_ChIPSeq-GSM936124.36mers.unique.bam SAMstats-input_mitotic_S2-PH_ChIPSeq-GSM936124 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py PH_control_S2-PH_ChIPSeq-GSM936123.36mers.unique.bam SAMstats-PH_control_S2-PH_ChIPSeq-GSM936123 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py PH_mitotic_S2-PH_ChIPSeq-GSM936122.36mers.unique.bam SAMstats-PH_mitotic_S2-PH_ChIPSeq-GSM936122 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py PSC_control_S2_ChIPSeq_replicate_1-GSM936116.36mers.unique.bam SAMstats-PSC_control_S2_ChIPSeq_replicate_1-GSM936116 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py PSC_control_S2_ChIPSeq_replicate_2-GSM936117.36mers.unique.bam SAMstats-PSC_control_S2_ChIPSeq_replicate_2-GSM936117 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py PSC_mitotic_S2_ChIPSeq_replicate_1-GSM936114.36mers.unique.bam SAMstats-PSC_mitotic_S2_ChIPSeq_replicate_1-GSM936114 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py PSC_mitotic_S2_ChIPSeq_replicate_2-GSM936115.36mers.unique.bam SAMstats-PSC_mitotic_S2_ChIPSeq_replicate_2-GSM936115 -bam /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools