/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t PH_control_S2-PH_ChIPSeq-GSM936123.36mers.unique.bam -c input_control_S2-PH_ChIPSeq-GSM936125.36mers.unique.bam -n PH_control_S2-PH_ChIPSeq-GSM936123.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t PH_mitotic_S2-PH_ChIPSeq-GSM936122.36mers.unique.bam -c input_mitotic_S2-PH_ChIPSeq-GSM936124.36mers.unique.bam -n PH_mitotic_S2-PH_ChIPSeq-GSM936122.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t PSC_control_S2_ChIPSeq_replicate_1-GSM936116.36mers.unique.bam -c input_control_S2_ChIPSeq_replicate_1-GSM936120.bam -n PSC_control_S2_ChIPSeq_replicate_1-GSM936116.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t PSC_control_S2_ChIPSeq_replicate_2-GSM936117.36mers.unique.bam -c input_control_S2_ChIPSeq_replicate_2-GSM936121.36mers.unique.bam -n PSC_control_S2_ChIPSeq_replicate_2-GSM936117.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t PSC_mitotic_S2_ChIPSeq_replicate_1-GSM936114.36mers.unique.bam -c input_mitotic_S2_ChIPSeq_replicate_1-GSM936118.36mers.unique.bam -n PSC_mitotic_S2_ChIPSeq_replicate_1-GSM936114.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t PSC_mitotic_S2_ChIPSeq_replicate_2-GSM936115.36mers.unique.bam -c input_mitotic_S2_ChIPSeq_replicate_2-GSM936119.36mers.unique.bam -n PSC_mitotic_S2_ChIPSeq_replicate_2-GSM936115.36mers.unique.MACS-2.1.0 -g dm -f BAM