Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_dUTX663_3-GSM1017401.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_dUTX663_3-GSM1017401.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_H3K27ac_1-GSM1017404.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_H3K27ac_1-GSM1017404.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_H3K27ac_2-GSM1017405.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_H3K27ac_2-GSM1017405.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_H3K27me3_4-GSM1017406.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_H3K27me3_4-GSM1017406.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_H3K4me1_1-GSM1017407.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_H3K4me1_1-GSM1017407.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_H3K4me1_4-GSM1017408.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_H3K4me1_4-GSM1017408.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_H3K4me3_5-GSM1017409.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_H3K4me3_5-GSM1017409.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_H3K4me3_6-GSM1017410.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_H3K4me3_6-GSM1017410.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_Input_1-GSM1017394.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_Input_1-GSM1017394.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_Input_2-GSM1017395.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_Input_2-GSM1017395.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_Input_3-GSM1017396.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_Input_3-GSM1017396.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_Input_4-GSM1017397.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_Input_4-GSM1017397.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_Input_5-GSM1017398.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_Input_5-GSM1017398.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_Input_6-GSM1017399.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_Input_6-GSM1017399.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_LPT470_3-GSM1017402.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_LPT470_3-GSM1017402.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_RNAPolII_5-GSM1017403.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_RNAPolII_5-GSM1017403.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=WT_Trr_6-GSM1017400.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=WT_Trr_6-GSM1017400.36mers.unique.QC