/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t S2_CTCF200_ChIPSeq_1_and_2-GSM499649.36mers.unique.bam -c S2_CTCF200_INPUT_1-GSM499650.36mers.unique.bam -n S2_CTCF200_ChIPSeq_1_and_2-GSM499649.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t S2_CTCF500_ChIPSeq_1_and_2-GSM499651.36mers.unique.bam -c S2_CTCF500_INPUT_1-GSM499652.36mers.unique.bam -n S2_CTCF500_ChIPSeq_1_and_2-GSM499651.36mers.unique.MACS-2.1.0 -g dm -f BAM