/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t S2-AbdA_HA-AbdA_ChIPSeq_Rep1-GSM2706045.36mers.unique.bam -c S2_HA_Ctrl_ChIPSeq_Rep1-GSM2706044.36mers.unique.bam -n S2-AbdA_HA-AbdA_ChIPSeq_Rep1-GSM2706045.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t S2-AbdA_HA-AbdA_ChIPSeq_Rep2-GSM2706046.36mers.unique.bam -c S2_HA_Ctrl_ChIPSeq_Rep1-GSM2706044.36mers.unique.bam -n S2-AbdA_HA-AbdA_ChIPSeq_Rep2-GSM2706046.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t S2_GAGA_ChIPSeq_Rep1-GSM2706059.36mers.unique.bam -c S2_Input_B_rep1-GSM2706072.36mers.unique.bam -n S2_GAGA_ChIPSeq_Rep1-GSM2706059.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t S2_GAGA_ChIPSeq_Rep2-GSM2706060.36mers.unique.bam -c S2_Input_B_rep2-GSM2706073.36mers.unique.bam -n S2_GAGA_ChIPSeq_Rep2-GSM2706060.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t S2_M1BP_ChIPSeq_Rep1-GSM2706055.36mers.unique.bam -c S2_Input_B_rep1-GSM2706072.36mers.unique.bam -n S2_M1BP_ChIPSeq_Rep1-GSM2706055.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t S2_M1BP_ChIPSeq_Rep2-GSM2706056.36mers.unique.bam -c S2_Input_B_rep2-GSM2706073.36mers.unique.bam -n S2_M1BP_ChIPSeq_Rep2-GSM2706056.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t S2-Ubx_HA-Ubx_ChIPSeq_Rep1-GSM2706083.36mers.unique.bam -c S2-Ubx_Input-GSM2706085.36mers.unique.bam -n S2-Ubx_HA-Ubx_ChIPSeq_Rep1-GSM2706083.36mers.unique.MACS-2.1.0 -g dm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t S2-Ubx_HA-Ubx_ChIPSeq_Rep2-GSM2706084.36mers.unique.bam -c S2-Ubx_Input-GSM2706085.36mers.unique.bam -n S2-Ubx_HA-Ubx_ChIPSeq_Rep2-GSM2706084.36mers.unique.MACS-2.1.0 -g dm -f BAM