cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/57-Waddlia_chondrophila_WSU_86_1044_uid49531; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=AtoC_EB-GSM1662005.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=AtoC_EB-GSM1662005.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/57-Waddlia_chondrophila_WSU_86_1044_uid49531; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=DnaA1_72h-GSM1662007.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=DnaA1_72h-GSM1662007.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/57-Waddlia_chondrophila_WSU_86_1044_uid49531; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=DnaA3_24h-GSM1662006.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=DnaA3_24h-GSM1662006.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/57-Waddlia_chondrophila_WSU_86_1044_uid49531; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Euo_72h-GSM1662000.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Euo_72h-GSM1662000.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/57-Waddlia_chondrophila_WSU_86_1044_uid49531; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=HrcA_72h-GSM1661998.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=HrcA_72h-GSM1661998.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/57-Waddlia_chondrophila_WSU_86_1044_uid49531; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=NrdR_EB-GSM1662004.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=NrdR_EB-GSM1662004.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/57-Waddlia_chondrophila_WSU_86_1044_uid49531; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=ParB_EB-GSM1662003.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=ParB_EB-GSM1662003.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/57-Waddlia_chondrophila_WSU_86_1044_uid49531; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PhoB_EB-GSM1662001.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=PhoB_EB-GSM1662001.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/57-Waddlia_chondrophila_WSU_86_1044_uid49531; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Wcw_1223_56h-GSM1662002.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Wcw_1223_56h-GSM1662002.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/57-Waddlia_chondrophila_WSU_86_1044_uid49531; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Wcw_1671_EB-GSM1661999.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Wcw_1671_EB-GSM1661999.36mers.unique.QC