cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=HA69770_HA1-GSM1616430.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=HA69770_HA1-GSM1616430.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=HA69770_HA2-GSM1616431.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=HA69770_HA2-GSM1616431.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=HA69770_HA3-GSM1616432.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=HA69770_HA3-GSM1616432.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=HA69770_empty1-GSM1616433.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=HA69770_empty1-GSM1616433.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=HA69770_empty2-GSM1616434.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=HA69770_empty2-GSM1616434.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=HA69770_empty3-GSM1616435.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=HA69770_empty3-GSM1616435.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=rpoA_HA1-GSM1616436.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=rpoA_HA1-GSM1616436.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=rpoA_HA2-GSM1616437.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=rpoA_HA2-GSM1616437.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=rpoA_HA3-GSM1616438.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=rpoA_HA3-GSM1616438.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=rpoA_empty1-GSM1616439.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=rpoA_empty1-GSM1616439.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=rpoA_empty2-GSM1616440.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=rpoA_empty2-GSM1616440.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=rpoA_empty3-GSM1616441.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=rpoA_empty3-GSM1616441.36mers.unique.QC