cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py HA69770_HA1-GSM1616430.36mers.unique.bam SAMstats-HA69770_HA1-GSM1616430.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py HA69770_HA2-GSM1616431.36mers.unique.bam SAMstats-HA69770_HA2-GSM1616431.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py HA69770_HA3-GSM1616432.36mers.unique.bam SAMstats-HA69770_HA3-GSM1616432.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py HA69770_empty1-GSM1616433.36mers.unique.bam SAMstats-HA69770_empty1-GSM1616433.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py HA69770_empty2-GSM1616434.36mers.unique.bam SAMstats-HA69770_empty2-GSM1616434.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py HA69770_empty3-GSM1616435.36mers.unique.bam SAMstats-HA69770_empty3-GSM1616435.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py rpoA_HA1-GSM1616436.36mers.unique.bam SAMstats-rpoA_HA1-GSM1616436.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py rpoA_HA2-GSM1616437.36mers.unique.bam SAMstats-rpoA_HA2-GSM1616437.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py rpoA_HA3-GSM1616438.36mers.unique.bam SAMstats-rpoA_HA3-GSM1616438.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py rpoA_empty1-GSM1616439.36mers.unique.bam SAMstats-rpoA_empty1-GSM1616439.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py rpoA_empty2-GSM1616440.36mers.unique.bam SAMstats-rpoA_empty2-GSM1616440.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/56-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py rpoA_empty3-GSM1616441.36mers.unique.bam SAMstats-rpoA_empty3-GSM1616441.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools