cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/43-Escherichia_coli_str._MG1655; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== OxyR-PQ-1-GSM1603380-ChIP-exo.31mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes OxyR-PQ-1-GSM1603380-ChIP-exo.31mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/43-Escherichia_coli_str._MG1655; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== OxyR-PQ-2-GSM1603381-ChIP-exo.31mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes OxyR-PQ-2-GSM1603381-ChIP-exo.31mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/43-Escherichia_coli_str._MG1655; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SoxR-PQ-1-GSM1603382-ChIP-exo.31mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes SoxR-PQ-1-GSM1603382-ChIP-exo.31mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/43-Escherichia_coli_str._MG1655; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SoxR-PQ-2-GSM1603383-ChIP-exo.31mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes SoxR-PQ-2-GSM1603383-ChIP-exo.31mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/43-Escherichia_coli_str._MG1655; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SoxS-PQ-1-GSM1603384-ChIP-exo.31mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes SoxS-PQ-1-GSM1603384-ChIP-exo.31mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/43-Escherichia_coli_str._MG1655; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SoxS-PQ-2-GSM1603385-ChIP-exo.31mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes SoxS-PQ-2-GSM1603385-ChIP-exo.31mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/43-Escherichia_coli_str._MG1655; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== OxyR-PQ-1-GSM1603380-ChIP-exo.31mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes OxyR-PQ-1-GSM1603380-ChIP-exo.31mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/43-Escherichia_coli_str._MG1655; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== OxyR-PQ-2-GSM1603381-ChIP-exo.31mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes OxyR-PQ-2-GSM1603381-ChIP-exo.31mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/43-Escherichia_coli_str._MG1655; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SoxR-PQ-1-GSM1603382-ChIP-exo.31mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes SoxR-PQ-1-GSM1603382-ChIP-exo.31mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/43-Escherichia_coli_str._MG1655; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SoxR-PQ-2-GSM1603383-ChIP-exo.31mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes SoxR-PQ-2-GSM1603383-ChIP-exo.31mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/43-Escherichia_coli_str._MG1655; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SoxS-PQ-1-GSM1603384-ChIP-exo.31mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes SoxS-PQ-1-GSM1603384-ChIP-exo.31mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/43-Escherichia_coli_str._MG1655; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SoxS-PQ-2-GSM1603385-ChIP-exo.31mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes SoxS-PQ-2-GSM1603385-ChIP-exo.31mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &