cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=2588-1-GSM1593057.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=2588-1-GSM1593057.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=2588-2-GSM1593058.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=2588-2-GSM1593058.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=algR1-GSM1593051.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=algR1-GSM1593051.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=algR2-GSM1593052.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=algR2-GSM1593052.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=exsA1-GSM1593053.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=exsA1-GSM1593053.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=exsA2-GSM1593054.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=exsA2-GSM1593054.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=gacA1-GSM1593055.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=gacA1-GSM1593055.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=gacA2-GSM1593056.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=gacA2-GSM1593056.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=mexT1-GSM1593059.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=mexT1-GSM1593059.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=mexT2-GSM1593060.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=mexT2-GSM1593060.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=mvfR1-GSM1593043.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=mvfR1-GSM1593043.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=mvfR2-GSM1593044.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=mvfR2-GSM1593044.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=rpoN1-GSM1593047.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=rpoN1-GSM1593047.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=rpoN2-GSM1593048.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=rpoN2-GSM1593048.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=soxR1-GSM1593045.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=soxR1-GSM1593045.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=soxR2-GSM1593046.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=soxR2-GSM1593046.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=vfr1-GSM1593049.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=vfr1-GSM1593049.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=vfr2-GSM1593050.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=vfr2-GSM1593050.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=wspR1-GSM1593061.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=wspR1-GSM1593061.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/41-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=wspR2-GSM1593062.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=wspR2-GSM1593062.36mers.unique.QC