cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PA14_wildtype_sample1-GSM1563551.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PA14_wildtype_sample1-GSM1563551.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PA14_wildtype_sample2-GSM1563552.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PA14_wildtype_sample2-GSM1563552.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PhoB_chip-GSM1563545.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PhoB_chip-GSM1563545.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PhoB_control-GSM1563546.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PhoB_control-GSM1563546.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PhoB_deletion_mutant_sample1-GSM1563547.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PhoB_deletion_mutant_sample1-GSM1563547.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PhoB_deletion_mutant_sample2-GSM1563548.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PhoB_deletion_mutant_sample2-GSM1563548.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== TctD_transposon_mutant_sample1-GSM1563549.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes TctD_transposon_mutant_sample1-GSM1563549.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== TctD_transposon_mutant_sample2-GSM1563550.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes TctD_transposon_mutant_sample2-GSM1563550.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PA14_wildtype_sample1-GSM1563551.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PA14_wildtype_sample1-GSM1563551.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PA14_wildtype_sample2-GSM1563552.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PA14_wildtype_sample2-GSM1563552.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PhoB_chip-GSM1563545.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PhoB_chip-GSM1563545.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PhoB_control-GSM1563546.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PhoB_control-GSM1563546.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PhoB_deletion_mutant_sample1-GSM1563547.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PhoB_deletion_mutant_sample1-GSM1563547.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PhoB_deletion_mutant_sample2-GSM1563548.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PhoB_deletion_mutant_sample2-GSM1563548.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== TctD_transposon_mutant_sample1-GSM1563549.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes TctD_transposon_mutant_sample1-GSM1563549.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== TctD_transposon_mutant_sample2-GSM1563550.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes TctD_transposon_mutant_sample2-GSM1563550.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &