cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PA14_wildtype_sample1-GSM1563551.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=PA14_wildtype_sample1-GSM1563551.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PA14_wildtype_sample2-GSM1563552.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=PA14_wildtype_sample2-GSM1563552.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PhoB_chip-GSM1563545.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=PhoB_chip-GSM1563545.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PhoB_control-GSM1563546.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=PhoB_control-GSM1563546.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PhoB_deletion_mutant_sample1-GSM1563547.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=PhoB_deletion_mutant_sample1-GSM1563547.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PhoB_deletion_mutant_sample2-GSM1563548.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=PhoB_deletion_mutant_sample2-GSM1563548.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=TctD_transposon_mutant_sample1-GSM1563549.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=TctD_transposon_mutant_sample1-GSM1563549.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=TctD_transposon_mutant_sample2-GSM1563550.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=TctD_transposon_mutant_sample2-GSM1563550.36mers.unique.QC