cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py PhoB_chip-GSM1563545.36mers.unique.bam SAMstats-PhoB_chip-GSM1563545.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py PhoB_control-GSM1563546.36mers.unique.bam SAMstats-PhoB_control-GSM1563546.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py PhoB_deletion_mutant_sample1-GSM1563547.36mers.unique.bam SAMstats-PhoB_deletion_mutant_sample1-GSM1563547.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py PhoB_deletion_mutant_sample2-GSM1563548.36mers.unique.bam SAMstats-PhoB_deletion_mutant_sample2-GSM1563548.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py TctD_transposon_mutant_sample1-GSM1563549.36mers.unique.bam SAMstats-TctD_transposon_mutant_sample1-GSM1563549.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py TctD_transposon_mutant_sample2-GSM1563550.36mers.unique.bam SAMstats-TctD_transposon_mutant_sample2-GSM1563550.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py PA14_wildtype_sample1-GSM1563551.36mers.unique.bam SAMstats-PA14_wildtype_sample1-GSM1563551.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/39-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py PA14_wildtype_sample2-GSM1563552.36mers.unique.bam SAMstats-PA14_wildtype_sample2-GSM1563552.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools