cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_Beta_prime-V-rep1.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_Beta_prime-V-rep1.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_Beta_prime-V-rep2.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_Beta_prime-V-rep2.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_HipB-V-rep1.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_HipB-V-rep1.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_HipB-V-rep2.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_HipB-V-rep2.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_HipB-V-rep3.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_HipB-V-rep3.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_MglA-TAP-rep1.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_MglA-TAP-rep1.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_MglA-TAP-rep2.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_MglA-TAP-rep2.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_MglA-TAP-rep3.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_MglA-TAP-rep3.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_PigR-V-rep1.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_PigR-V-rep1.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_PigR-V-rep2.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_PigR-V-rep2.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_PigR-V-rep3.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_PigR-V-rep3.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_Sigma32-V-rep1.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_Sigma32-V-rep1.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_Sigma32-V-rep2.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_Sigma32-V-rep2.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_Sigma32-V-rep3.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_Sigma32-V-rep3.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_Sigma70-V-rep1.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_Sigma70-V-rep1.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_Sigma70-V-rep2.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_Sigma70-V-rep2.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_Sigma70-V-rep3.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_Sigma70-V-rep3.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_Sigma70-V-rep4.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_Sigma70-V-rep4.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_SspA-V-rep1.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_SspA-V-rep1.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_SspA-V-rep2.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_SspA-V-rep2.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_SspA-V-rep3.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_SspA-V-rep3.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_delta_pigR_delta_mglA_pF-PigR-V-rep1.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_delta_pigR_delta_mglA_pF-PigR-V-rep1.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_delta_pigR_delta_mglA_pF-PigR-V-rep2.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_delta_pigR_delta_mglA_pF-PigR-V-rep2.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_delta_pigR_pF2-PigR-V-rep1.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_delta_pigR_pF2-PigR-V-rep1.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_delta_pigR_pF2-PigR-V-rep2.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_delta_pigR_pF2-PigR-V-rep2.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_delta_pigR_pF2-PigR-V-rep3.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_delta_pigR_pF2-PigR-V-rep3.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_mock-rep1.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_mock-rep1.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_mock-rep2.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_mock-rep2.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_mock-rep3.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_mock-rep3.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_pF_lacking_any_VSV-G_tagged_protein:_Sample_LVS_pF-rep1.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_pF_lacking_any_VSV-G_tagged_protein:_Sample_LVS_pF-rep1.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=LVS_pF_lacking_any_VSV-G_tagged_protein:_Sample_LVS_pF-rep2.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=LVS_pF_lacking_any_VSV-G_tagged_protein:_Sample_LVS_pF-rep2.36mers.unique.QC