cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_mock-rep1.36mers.unique.bam SAMstats-LVS_mock-rep1.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_mock-rep2.36mers.unique.bam SAMstats-LVS_mock-rep2.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_mock-rep3.36mers.unique.bam SAMstats-LVS_mock-rep3.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_delta_pigR_delta_mglA_pF-PigR-V-rep1.36mers.unique.bam SAMstats-LVS_delta_pigR_delta_mglA_pF-PigR-V-rep1.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_delta_pigR_delta_mglA_pF-PigR-V-rep2.36mers.unique.bam SAMstats-LVS_delta_pigR_delta_mglA_pF-PigR-V-rep2.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_delta_pigR_pF2-PigR-V-rep1.36mers.unique.bam SAMstats-LVS_delta_pigR_pF2-PigR-V-rep1.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_delta_pigR_pF2-PigR-V-rep2.36mers.unique.bam SAMstats-LVS_delta_pigR_pF2-PigR-V-rep2.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_delta_pigR_pF2-PigR-V-rep3.36mers.unique.bam SAMstats-LVS_delta_pigR_pF2-PigR-V-rep3.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_pF_lacking_any_VSV-G_tagged_protein:_Sample_LVS_pF-rep1.36mers.unique.bam SAMstats-LVS_pF_lacking_any_VSV-G_tagged_protein:_Sample_LVS_pF-rep1.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_pF_lacking_any_VSV-G_tagged_protein:_Sample_LVS_pF-rep2.36mers.unique.bam SAMstats-LVS_pF_lacking_any_VSV-G_tagged_protein:_Sample_LVS_pF-rep2.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_HipB-V-rep1.36mers.unique.bam SAMstats-LVS_HipB-V-rep1.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_HipB-V-rep2.36mers.unique.bam SAMstats-LVS_HipB-V-rep2.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_HipB-V-rep3.36mers.unique.bam SAMstats-LVS_HipB-V-rep3.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_PigR-V-rep1.36mers.unique.bam SAMstats-LVS_PigR-V-rep1.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_PigR-V-rep2.36mers.unique.bam SAMstats-LVS_PigR-V-rep2.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_PigR-V-rep3.36mers.unique.bam SAMstats-LVS_PigR-V-rep3.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_SspA-V-rep1.36mers.unique.bam SAMstats-LVS_SspA-V-rep1.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_SspA-V-rep2.36mers.unique.bam SAMstats-LVS_SspA-V-rep2.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_SspA-V-rep3.36mers.unique.bam SAMstats-LVS_SspA-V-rep3.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_MglA-TAP-rep1.36mers.unique.bam SAMstats-LVS_MglA-TAP-rep1.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_MglA-TAP-rep2.36mers.unique.bam SAMstats-LVS_MglA-TAP-rep2.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_MglA-TAP-rep3.36mers.unique.bam SAMstats-LVS_MglA-TAP-rep3.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_Sigma32-V-rep1.36mers.unique.bam SAMstats-LVS_Sigma32-V-rep1.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_Sigma32-V-rep2.36mers.unique.bam SAMstats-LVS_Sigma32-V-rep2.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_Sigma32-V-rep3.36mers.unique.bam SAMstats-LVS_Sigma32-V-rep3.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_Sigma70-V-rep1.36mers.unique.bam SAMstats-LVS_Sigma70-V-rep1.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_Sigma70-V-rep2.36mers.unique.bam SAMstats-LVS_Sigma70-V-rep2.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_Sigma70-V-rep3.36mers.unique.bam SAMstats-LVS_Sigma70-V-rep3.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_Sigma70-V-rep4.36mers.unique.bam SAMstats-LVS_Sigma70-V-rep4.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_Beta_prime-V-rep1.36mers.unique.bam SAMstats-LVS_Beta_prime-V-rep1.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/32-Francisella_tularensis_holarctica_LVS_uid58595; python /N/dc2/projects/marinovg/code/SAMstats.py LVS_Beta_prime-V-rep2.36mers.unique.bam SAMstats-LVS_Beta_prime-V-rep2.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Francisella_tularensis_holarctica_LVS_uid58595/NC_007880.chrom.sizes samtools