cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== AlgU_chip_sample1-GSM1327699.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes AlgU_chip_sample1-GSM1327699.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== AlgU_chip_sample2-GSM1327700.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes AlgU_chip_sample2-GSM1327700.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== AlgU_control_sample1-GSM1327701.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes AlgU_control_sample1-GSM1327701.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== AlgU_control_sample2-GSM1327702.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes AlgU_control_sample2-GSM1327702.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FecI2_chip_sample1-GSM1327703.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FecI2_chip_sample1-GSM1327703.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FecI2_chip_sample2-GSM1327704.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FecI2_chip_sample2-GSM1327704.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FecI_chip_sample1-GSM1327705.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FecI_chip_sample1-GSM1327705.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FecI_chip_sample2-GSM1327706.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FecI_chip_sample2-GSM1327706.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FliA_chip_sample1-GSM1327707.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FliA_chip_sample1-GSM1327707.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FliA_chip_sample2-GSM1327708.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FliA_chip_sample2-GSM1327708.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FpvI_chip_sample1-GSM1327709.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FpvI_chip_sample1-GSM1327709.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FpvI_chip_sample2-GSM1327710.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FpvI_chip_sample2-GSM1327710.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PvdS_chip_sample1-GSM1327711.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PvdS_chip_sample1-GSM1327711.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PvdS_chip_sample2-GSM1327712.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PvdS_chip_sample2-GSM1327712.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PvdS_control_sample1-GSM1327713.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PvdS_control_sample1-GSM1327713.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PvdS_control_sample2-GSM1327714.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PvdS_control_sample2-GSM1327714.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoD_FliA_control_sample1-GSM1327717.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoD_FliA_control_sample1-GSM1327717.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoD_FliA_control_sample2-GSM1327718.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoD_FliA_control_sample2-GSM1327718.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoD_chip_sample1-GSM1327715.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoD_chip_sample1-GSM1327715.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoD_chip_sample2-GSM1327716.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoD_chip_sample2-GSM1327716.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoH_chip_sample1-GSM1327719.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoH_chip_sample1-GSM1327719.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoH_chip_sample2-GSM1327720.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoH_chip_sample2-GSM1327720.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoH_control_sample1-GSM1327721.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoH_control_sample1-GSM1327721.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoH_control_sample2-GSM1327722.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoH_control_sample2-GSM1327722.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoN_RpoS_control_sample1-GSM1327725.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoN_RpoS_control_sample1-GSM1327725.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoN_RpoS_control_sample2-GSM1327726.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoN_RpoS_control_sample2-GSM1327726.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoN_chip_sample1-GSM1327723.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoN_chip_sample1-GSM1327723.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoN_chip_sample2-GSM1327724.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoN_chip_sample2-GSM1327724.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoS_chip_sample1-GSM1327727.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoS_chip_sample1-GSM1327727.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoS_chip_sample2-GSM1327728.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoS_chip_sample2-GSM1327728.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SigX_chip_sample1-GSM1327729.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes SigX_chip_sample1-GSM1327729.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SigX_chip_sample2-GSM1327730.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes SigX_chip_sample2-GSM1327730.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SigX_control_sample1-GSM1327731.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes SigX_control_sample1-GSM1327731.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SigX_control_sample2-GSM1327732.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes SigX_control_sample2-GSM1327732.36mers.unique.plus.wig -stranded + -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== AlgU_chip_sample1-GSM1327699.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes AlgU_chip_sample1-GSM1327699.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== AlgU_chip_sample2-GSM1327700.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes AlgU_chip_sample2-GSM1327700.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== AlgU_control_sample1-GSM1327701.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes AlgU_control_sample1-GSM1327701.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== AlgU_control_sample2-GSM1327702.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes AlgU_control_sample2-GSM1327702.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FecI2_chip_sample1-GSM1327703.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FecI2_chip_sample1-GSM1327703.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FecI2_chip_sample2-GSM1327704.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FecI2_chip_sample2-GSM1327704.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FecI_chip_sample1-GSM1327705.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FecI_chip_sample1-GSM1327705.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FecI_chip_sample2-GSM1327706.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FecI_chip_sample2-GSM1327706.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FliA_chip_sample1-GSM1327707.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FliA_chip_sample1-GSM1327707.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FliA_chip_sample2-GSM1327708.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FliA_chip_sample2-GSM1327708.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FpvI_chip_sample1-GSM1327709.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FpvI_chip_sample1-GSM1327709.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== FpvI_chip_sample2-GSM1327710.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes FpvI_chip_sample2-GSM1327710.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PvdS_chip_sample1-GSM1327711.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PvdS_chip_sample1-GSM1327711.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PvdS_chip_sample2-GSM1327712.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PvdS_chip_sample2-GSM1327712.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PvdS_control_sample1-GSM1327713.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PvdS_control_sample1-GSM1327713.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== PvdS_control_sample2-GSM1327714.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes PvdS_control_sample2-GSM1327714.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoD_FliA_control_sample1-GSM1327717.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoD_FliA_control_sample1-GSM1327717.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoD_FliA_control_sample2-GSM1327718.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoD_FliA_control_sample2-GSM1327718.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoD_chip_sample1-GSM1327715.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoD_chip_sample1-GSM1327715.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoD_chip_sample2-GSM1327716.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoD_chip_sample2-GSM1327716.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoH_chip_sample1-GSM1327719.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoH_chip_sample1-GSM1327719.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoH_chip_sample2-GSM1327720.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoH_chip_sample2-GSM1327720.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoH_control_sample1-GSM1327721.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoH_control_sample1-GSM1327721.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoH_control_sample2-GSM1327722.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoH_control_sample2-GSM1327722.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoN_RpoS_control_sample1-GSM1327725.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoN_RpoS_control_sample1-GSM1327725.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoN_RpoS_control_sample2-GSM1327726.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoN_RpoS_control_sample2-GSM1327726.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoN_chip_sample1-GSM1327723.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoN_chip_sample1-GSM1327723.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoN_chip_sample2-GSM1327724.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoN_chip_sample2-GSM1327724.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoS_chip_sample1-GSM1327727.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoS_chip_sample1-GSM1327727.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== RpoS_chip_sample2-GSM1327728.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes RpoS_chip_sample2-GSM1327728.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SigX_chip_sample1-GSM1327729.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes SigX_chip_sample1-GSM1327729.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SigX_chip_sample2-GSM1327730.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes SigX_chip_sample2-GSM1327730.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SigX_control_sample1-GSM1327731.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes SigX_control_sample1-GSM1327731.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ===== SigX_control_sample2-GSM1327732.36mers.unique.bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes SigX_control_sample2-GSM1327732.36mers.unique.minus.wig -stranded - -uniqueBAM -notitle -RPM &