cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=AlgU_chip_sample1-GSM1327699.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=AlgU_chip_sample1-GSM1327699.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=AlgU_chip_sample2-GSM1327700.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=AlgU_chip_sample2-GSM1327700.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=AlgU_control_sample1-GSM1327701.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=AlgU_control_sample1-GSM1327701.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=AlgU_control_sample2-GSM1327702.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=AlgU_control_sample2-GSM1327702.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=FecI2_chip_sample1-GSM1327703.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=FecI2_chip_sample1-GSM1327703.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=FecI2_chip_sample2-GSM1327704.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=FecI2_chip_sample2-GSM1327704.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=FecI_chip_sample1-GSM1327705.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=FecI_chip_sample1-GSM1327705.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=FecI_chip_sample2-GSM1327706.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=FecI_chip_sample2-GSM1327706.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=FliA_chip_sample1-GSM1327707.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=FliA_chip_sample1-GSM1327707.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=FliA_chip_sample2-GSM1327708.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=FliA_chip_sample2-GSM1327708.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=FpvI_chip_sample1-GSM1327709.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=FpvI_chip_sample1-GSM1327709.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=FpvI_chip_sample2-GSM1327710.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=FpvI_chip_sample2-GSM1327710.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PvdS_chip_sample1-GSM1327711.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=PvdS_chip_sample1-GSM1327711.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PvdS_chip_sample2-GSM1327712.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=PvdS_chip_sample2-GSM1327712.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PvdS_control_sample1-GSM1327713.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=PvdS_control_sample1-GSM1327713.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PvdS_control_sample2-GSM1327714.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=PvdS_control_sample2-GSM1327714.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RpoD_FliA_control_sample1-GSM1327717.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RpoD_FliA_control_sample1-GSM1327717.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RpoD_FliA_control_sample2-GSM1327718.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RpoD_FliA_control_sample2-GSM1327718.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RpoD_chip_sample1-GSM1327715.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RpoD_chip_sample1-GSM1327715.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RpoD_chip_sample2-GSM1327716.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RpoD_chip_sample2-GSM1327716.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RpoH_chip_sample1-GSM1327719.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RpoH_chip_sample1-GSM1327719.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RpoH_chip_sample2-GSM1327720.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RpoH_chip_sample2-GSM1327720.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RpoH_control_sample1-GSM1327721.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RpoH_control_sample1-GSM1327721.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RpoH_control_sample2-GSM1327722.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RpoH_control_sample2-GSM1327722.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RpoN_RpoS_control_sample1-GSM1327725.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RpoN_RpoS_control_sample1-GSM1327725.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RpoN_RpoS_control_sample2-GSM1327726.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RpoN_RpoS_control_sample2-GSM1327726.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RpoN_chip_sample1-GSM1327723.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RpoN_chip_sample1-GSM1327723.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RpoN_chip_sample2-GSM1327724.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RpoN_chip_sample2-GSM1327724.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RpoS_chip_sample1-GSM1327727.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RpoS_chip_sample1-GSM1327727.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RpoS_chip_sample2-GSM1327728.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RpoS_chip_sample2-GSM1327728.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=SigX_chip_sample1-GSM1327729.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=SigX_chip_sample1-GSM1327729.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=SigX_chip_sample2-GSM1327730.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=SigX_chip_sample2-GSM1327730.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=SigX_control_sample1-GSM1327731.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=SigX_control_sample1-GSM1327731.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=SigX_control_sample2-GSM1327732.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=SigX_control_sample2-GSM1327732.36mers.unique.QC