cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py AlgU_chip_sample1-GSM1327699.36mers.unique.bam SAMstats-AlgU_chip_sample1-GSM1327699.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py AlgU_chip_sample2-GSM1327700.36mers.unique.bam SAMstats-AlgU_chip_sample2-GSM1327700.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py AlgU_control_sample1-GSM1327701.36mers.unique.bam SAMstats-AlgU_control_sample1-GSM1327701.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py AlgU_control_sample2-GSM1327702.36mers.unique.bam SAMstats-AlgU_control_sample2-GSM1327702.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py FecI2_chip_sample1-GSM1327703.36mers.unique.bam SAMstats-FecI2_chip_sample1-GSM1327703.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py FecI2_chip_sample2-GSM1327704.36mers.unique.bam SAMstats-FecI2_chip_sample2-GSM1327704.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py FecI_chip_sample1-GSM1327705.36mers.unique.bam SAMstats-FecI_chip_sample1-GSM1327705.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py FecI_chip_sample2-GSM1327706.36mers.unique.bam SAMstats-FecI_chip_sample2-GSM1327706.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py FliA_chip_sample1-GSM1327707.36mers.unique.bam SAMstats-FliA_chip_sample1-GSM1327707.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py FliA_chip_sample2-GSM1327708.36mers.unique.bam SAMstats-FliA_chip_sample2-GSM1327708.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py FpvI_chip_sample1-GSM1327709.36mers.unique.bam SAMstats-FpvI_chip_sample1-GSM1327709.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py FpvI_chip_sample2-GSM1327710.36mers.unique.bam SAMstats-FpvI_chip_sample2-GSM1327710.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py PvdS_chip_sample1-GSM1327711.36mers.unique.bam SAMstats-PvdS_chip_sample1-GSM1327711.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py PvdS_chip_sample2-GSM1327712.36mers.unique.bam SAMstats-PvdS_chip_sample2-GSM1327712.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py PvdS_control_sample1-GSM1327713.36mers.unique.bam SAMstats-PvdS_control_sample1-GSM1327713.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py PvdS_control_sample2-GSM1327714.36mers.unique.bam SAMstats-PvdS_control_sample2-GSM1327714.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py RpoD_chip_sample1-GSM1327715.36mers.unique.bam SAMstats-RpoD_chip_sample1-GSM1327715.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py RpoD_chip_sample2-GSM1327716.36mers.unique.bam SAMstats-RpoD_chip_sample2-GSM1327716.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py RpoD_FliA_control_sample1-GSM1327717.36mers.unique.bam SAMstats-RpoD_FliA_control_sample1-GSM1327717.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py RpoD_FliA_control_sample2-GSM1327718.36mers.unique.bam SAMstats-RpoD_FliA_control_sample2-GSM1327718.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py RpoH_chip_sample1-GSM1327719.36mers.unique.bam SAMstats-RpoH_chip_sample1-GSM1327719.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py RpoH_chip_sample2-GSM1327720.36mers.unique.bam SAMstats-RpoH_chip_sample2-GSM1327720.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py RpoH_control_sample1-GSM1327721.36mers.unique.bam SAMstats-RpoH_control_sample1-GSM1327721.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py RpoH_control_sample2-GSM1327722.36mers.unique.bam SAMstats-RpoH_control_sample2-GSM1327722.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py RpoN_chip_sample1-GSM1327723.36mers.unique.bam SAMstats-RpoN_chip_sample1-GSM1327723.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py RpoN_chip_sample2-GSM1327724.36mers.unique.bam SAMstats-RpoN_chip_sample2-GSM1327724.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py RpoN_RpoS_control_sample1-GSM1327725.36mers.unique.bam SAMstats-RpoN_RpoS_control_sample1-GSM1327725.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py RpoN_RpoS_control_sample2-GSM1327726.36mers.unique.bam SAMstats-RpoN_RpoS_control_sample2-GSM1327726.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py RpoS_chip_sample1-GSM1327727.36mers.unique.bam SAMstats-RpoS_chip_sample1-GSM1327727.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py RpoS_chip_sample2-GSM1327728.36mers.unique.bam SAMstats-RpoS_chip_sample2-GSM1327728.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py SigX_chip_sample1-GSM1327729.36mers.unique.bam SAMstats-SigX_chip_sample1-GSM1327729.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py SigX_chip_sample2-GSM1327730.36mers.unique.bam SAMstats-SigX_chip_sample2-GSM1327730.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py SigX_control_sample1-GSM1327731.36mers.unique.bam SAMstats-SigX_control_sample1-GSM1327731.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/31-Pseudomonas_aeruginosa_UCBPP-PA14; python /N/dc2/projects/marinovg/code/SAMstats.py SigX_control_sample2-GSM1327732.36mers.unique.bam SAMstats-SigX_control_sample2-GSM1327732.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Pseudomonas_aeruginosa_UCBPP-PA14-ASM1462v1/GCA_000014625.1_ASM1462v1_genomic.chrom.sizes samtools