cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=CrpK_3xMyc_ChIP_Seq-GSM1417293.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=CrpK_3xMyc_ChIP_Seq-GSM1417293.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=FnrL_ChIP_Seq_Rep1-GSM1417296.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=FnrL_ChIP_Seq_Rep1-GSM1417296.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=FnrL_ChIP_Seq_Rep2-GSM1417297.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=FnrL_ChIP_Seq_Rep2-GSM1417297.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=FnrL_ChIP_Seq_Rep3-GSM1417298.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=FnrL_ChIP_Seq_Rep3-GSM1417298.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=FnrL_Control_ChIP-GSM1417299.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=FnrL_Control_ChIP-GSM1417299.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Input_DNA-GSM1417300.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Input_DNA-GSM1417300.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Input_DNA_pairedEnd-GSM1417301.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Input_DNA_pairedEnd-GSM1417301.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Myc_Control_ChIP_seq_Aero-GSM1417302.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Myc_Control_ChIP_seq_Aero-GSM1417302.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Myc_Control_ChIP_seq_Photo-GSM1417303.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Myc_Control_ChIP_seq_Photo-GSM1417303.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=PrrA_3xMyc_ChIP_Seq-GSM1417292.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=PrrA_3xMyc_ChIP_Seq-GSM1417292.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RSP_2888_3xMyc_ChIP_Seq_Rep1-GSM1417294.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RSP_2888_3xMyc_ChIP_Seq_Rep1-GSM1417294.36mers.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=RSP_2888_3xMyc_ChIP_Seq_Rep2-GSM1417295.36mers.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=RSP_2888_3xMyc_ChIP_Seq_Rep2-GSM1417295.36mers.unique.QC