cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; python /N/dc2/projects/marinovg/code/SAMstats.py PrrA_3xMyc_ChIP_Seq-GSM1417292.36mers.unique.bam SAMstats-PrrA_3xMyc_ChIP_Seq-GSM1417292.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; python /N/dc2/projects/marinovg/code/SAMstats.py CrpK_3xMyc_ChIP_Seq-GSM1417293.36mers.unique.bam SAMstats-CrpK_3xMyc_ChIP_Seq-GSM1417293.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; python /N/dc2/projects/marinovg/code/SAMstats.py RSP_2888_3xMyc_ChIP_Seq_Rep1-GSM1417294.36mers.unique.bam SAMstats-RSP_2888_3xMyc_ChIP_Seq_Rep1-GSM1417294.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; python /N/dc2/projects/marinovg/code/SAMstats.py RSP_2888_3xMyc_ChIP_Seq_Rep2-GSM1417295.36mers.unique.bam SAMstats-RSP_2888_3xMyc_ChIP_Seq_Rep2-GSM1417295.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; python /N/dc2/projects/marinovg/code/SAMstats.py FnrL_ChIP_Seq_Rep1-GSM1417296.36mers.unique.bam SAMstats-FnrL_ChIP_Seq_Rep1-GSM1417296.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; python /N/dc2/projects/marinovg/code/SAMstats.py FnrL_ChIP_Seq_Rep2-GSM1417297.36mers.unique.bam SAMstats-FnrL_ChIP_Seq_Rep2-GSM1417297.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; python /N/dc2/projects/marinovg/code/SAMstats.py FnrL_ChIP_Seq_Rep3-GSM1417298.36mers.unique.bam SAMstats-FnrL_ChIP_Seq_Rep3-GSM1417298.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; python /N/dc2/projects/marinovg/code/SAMstats.py FnrL_Control_ChIP-GSM1417299.36mers.unique.bam SAMstats-FnrL_Control_ChIP-GSM1417299.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; python /N/dc2/projects/marinovg/code/SAMstats.py Input_DNA-GSM1417300.36mers.unique.bam SAMstats-Input_DNA-GSM1417300.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; python /N/dc2/projects/marinovg/code/SAMstats.py Input_DNA_pairedEnd-GSM1417301.36mers.unique.bam SAMstats-Input_DNA_pairedEnd-GSM1417301.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; python /N/dc2/projects/marinovg/code/SAMstats.py Myc_Control_ChIP_seq_Aero-GSM1417302.36mers.unique.bam SAMstats-Myc_Control_ChIP_seq_Aero-GSM1417302.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/25-Rhodobacter_sphaeroides; python /N/dc2/projects/marinovg/code/SAMstats.py Myc_Control_ChIP_seq_Photo-GSM1417303.36mers.unique.bam SAMstats-Myc_Control_ChIP_seq_Photo-GSM1417303.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Rhodobacter_sphaeroides_2.4.1-ASM1290v2/GCA_000012905.2_ASM1290v2_genomic.chrom.sizes samtools