cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupA-delhuB-mid-exponential_phase.36mers.unique.bam SAMstats-HupA-delhuB-mid-exponential_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupA-delhuB-late-exponential_phase.36mers.unique.bam SAMstats-HupA-delhuB-late-exponential_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupB_stationary_phase.36mers.unique.bam SAMstats-HupB_stationary_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupA-delhuB-transition-to-stationary_phase.36mers.unique.bam SAMstats-HupA-delhuB-transition-to-stationary_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupA-delhuB-stationary_phase.36mers.unique.bam SAMstats-HupA-delhuB-stationary_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupB_transition-two-stationary_phase.36mers.unique.bam SAMstats-HupB_transition-two-stationary_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupB-delhuA-mid-exponential_phase.36mers.unique.bam SAMstats-HupB-delhuA-mid-exponential_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupB-delhuA-late-exponential_phase.36mers.unique.bam SAMstats-HupB-delhuA-late-exponential_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupB_late-exponential_phase.36mers.unique.bam SAMstats-HupB_late-exponential_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupB-delhuA-transition-to-stationary_phase.36mers.unique.bam SAMstats-HupB-delhuA-transition-to-stationary_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupB-delhuA-stationary_phase.36mers.unique.bam SAMstats-HupB-delhuA-stationary_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupB_mid-exponential_phase.36mers.unique.bam SAMstats-HupB_mid-exponential_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupA_stationary_phase.36mers.unique.bam SAMstats-HupA_stationary_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupA_transition-to-stationary_phase.36mers.unique.bam SAMstats-HupA_transition-to-stationary_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupA_late-exponential_phase.36mers.unique.bam SAMstats-HupA_late-exponential_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py HupA_mid-exponential_phase.36mers.unique.bam SAMstats-HupA_mid-exponential_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py IhfB_stationary_phase.36mers.unique.bam SAMstats-IhfB_stationary_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py IhfB_transition-to-stationary_phase.36mers.unique.bam SAMstats-IhfB_transition-to-stationary_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py IhfB_late-exponential_phase.36mers.unique.bam SAMstats-IhfB_late-exponential_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py IhfB_mid-exponential_phase.36mers.unique.bam SAMstats-IhfB_mid-exponential_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py IhfD_stationary_phase.36mers.unique.bam SAMstats-IhfD_stationary_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py IhfA_transition-to-stationary.36mers.unique.bam SAMstats-IhfA_transition-to-stationary.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py IhfA_late-exponential_phase.36mers.unique.bam SAMstats-IhfA_late-exponential_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/19-Escherichia_coli_str._K-12; python /N/dc2/projects/marinovg/code/SAMstats.py IhfA_mid-exponential_phase.36mers.unique.bam SAMstats-IhfA_mid-exponential_phase.36mers.unique -bam /N/dc2/projects/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes samtools