cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=3249c_256_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=3249c_256_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=3597c_241_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=3597c_241_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0019c_387_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0019c_387_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0020c_385_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0020c_385_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0022c_389_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0022c_389_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0023_390_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0023_390_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0038_347_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0038_347_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0042c_391_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0042c_391_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0043c_215_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0043c_215_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0047c_348_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0047c_348_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0054_605_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0054_605_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0067c_392_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0067c_392_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0078_399_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0078_399_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0081_125_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0081_125_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0081_236_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0081_236_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0117_257_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0117_257_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0135c_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0135c_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0158_258_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0158_258_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0158_292_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0158_292_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0165c_397_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0165c_397_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0195_606_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0195_606_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0212c_400_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0212c_400_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0232_139_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0232_139_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0238_407_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0238_407_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0260c_408_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0260c_408_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0273c_409_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0273c_409_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0275c_410_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0275c_410_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0302_411_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0302_411_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0324_156_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0324_156_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0324_284_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0324_284_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0324_316_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0324_316_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0324_327_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0324_327_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0324_328_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0324_328_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0330c_607_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0330c_607_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0330c_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0330c_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0339c_412_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0339c_412_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0348_413_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0348_413_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0353_608_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0353_608_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0377_414_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0377_414_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0445c_418_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0445c_418_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0445c_533_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0445c_533_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0465c_343_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0465c_343_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0472c_609_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0472c_609_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0474_122_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0474_122_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0494_150_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0494_150_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0576_420_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0576_420_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0602c_135_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0602c_135_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0602c_339_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0602c_339_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0623_364_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0623_364_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0653c_157_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0653c_157_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0674_351_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0674_351_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0678_352_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0678_352_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0681_353_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0681_353_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0691c_425_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0691c_425_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0735_426_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0735_426_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0735_565_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0735_565_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0744c_427_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0744c_427_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0757_167_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0757_167_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0767c_355_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0767c_355_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0818_610_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0818_610_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0821c_356_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0821c_356_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0827c_129_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0827c_129_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0844c_428_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0844c_428_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0880_429_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0880_429_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0891c_387_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0891c_387_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0894_259_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0894_259_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0903c_433_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0903c_433_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0967_386_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0967_386_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv0981_299_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv0981_299_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1019_431_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1019_431_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1033c_432_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1033c_432_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1049_341_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1049_341_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1049_401_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1049_401_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1151c_434_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1151c_434_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1152_182_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1152_182_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1167c_333_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1167c_333_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1167c_346_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1167c_346_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1176c_357_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1176c_357_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1186c_611_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1186c_611_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1189_435_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1189_435_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1189_553_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1189_553_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1219c_487_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1219c_487_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1255c_168_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1255c_168_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1287_358_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1287_358_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1332_437_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1332_437_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1353c_612_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1353c_612_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1359_189_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1359_189_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1379_439_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1379_439_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1395_336_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1395_336_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1404_440_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1404_440_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1423_442_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1423_442_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1453_443_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1453_443_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1460_127_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1460_127_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1473a_444_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1473a_444_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1556_445_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1556_445_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1560_363_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1560_363_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1626_455_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1626_455_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1657_190_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1657_190_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1674c_456_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1674c_456_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1675c_457_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1675c_457_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1719_458_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1719_458_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1725c_365_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1725c_365_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1773c_329_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1773c_329_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1776c_459_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1776c_459_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1816_460_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1816_460_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1828_366_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1828_366_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1846c_461_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1846c_461_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1909c_130_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1909c_130_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1956_186_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1956_186_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1963c_417_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1963c_417_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1985c_124_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1985c_124_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1985c_215_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1985c_215_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1990c_324_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1990c_324_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv1994c_187_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv1994c_187_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2009_368_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2009_368_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2011c_374_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2011c_374_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2017_613_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2017_613_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2021c_140_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2021c_140_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2034_141_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2034_141_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2034_151_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2034_151_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2069_530_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2069_530_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2069c_614_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2069c_614_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2160a_378_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2160a_378_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2160c_342_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2160c_342_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2160c_402_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2160c_402_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2175c_615_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2175c_615_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2242_616_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2242_616_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2250c_617_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2250c_617_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2258c_487_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2258c_487_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2258c_618_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2258c_618_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2282c_620_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2282c_620_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2324_131_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2324_131_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2324_354_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2324_354_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2359_249_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2359_249_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2374c_290_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2374c_290_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2374c_362_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2374c_362_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2478c_621_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2478c_621_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2488c_488_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2488c_488_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2506_489_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2506_489_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2506_623_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2506_623_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2595_375_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2595_375_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2610c_180_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2610c_180_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2640c_136_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2640c_136_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2642_207_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2642_207_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2642_237_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2642_237_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2703_529_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2703_529_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2710_531_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2710_531_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2711_191_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2711_191_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2745c_142_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2745c_142_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2760c_624_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2760c_624_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2779c_490_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2779c_490_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2779c_625_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2779c_625_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2788_626_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2788_626_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2827c_627_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2827c_627_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2887_137_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2887_137_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2912c_629_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2912c_629_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2986c_630_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2986c_630_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv2989_138_MTB_tetr.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv2989_138_MTB_tetr.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3050c_334_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3050c_334_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3055_632_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3055_632_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3058c_633_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3058c_633_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3060c_123_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3060c_123_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3066_153_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3066_153_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3082c_634_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3082c_634_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3095_315_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3095_315_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3124_227_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3124_227_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3133c_121_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3133c_121_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3133c_239_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3133c_239_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3143_340_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3143_340_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3160c_240_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3160c_240_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3164c_369_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3164c_369_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3167c_272_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3167c_272_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3173c_379_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3173c_379_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3183_154_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3183_154_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3219_188_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3219_188_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3223c_126_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3223c_126_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3246c_208_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3246c_208_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3249c_317_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3249c_317_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3260c_335_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3260c_335_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3286c_404_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3286c_404_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3286c_534_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3286c_534_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3291c_152_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3291c_152_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3301c_381_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3301c_381_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3328c_528_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3328c_528_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3328c_637_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3328c_637_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3334_132_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3334_132_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3405c_155_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3405c_155_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3414c_532_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3414c_532_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3414c_638_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3414c_638_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3416_403_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3416_403_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3417c_371_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3417c_371_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3488_382_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3488_382_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3557c_457_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3557c_457_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3557c_639_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3557c_639_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3574_113_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3574_113_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3583c_192_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3583c_192_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3597c_289_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3597c_289_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3676_640_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3676_640_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3681c_169_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3681c_169_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3736_641_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3736_641_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3744_642_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3744_642_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3765c_344_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3765c_344_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3830c_380_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3830c_380_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3833_643_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3833_643_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3840_227_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3840_227_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3849_507_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3849_507_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3852_644_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3852_644_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3855_179_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3855_179_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3862c_170_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3862c_170_MTB_TETR.unique.QC
cd /N/dc2/projects/marinovg/2014-10-05-prokaryote-ChIP-seq/05-Mycobacterium_tuberculosis_H37Rv; module load openmpi; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=Rv3911_645_MTB_TETR.unique.bam -p=16 -savp -rf -s=-0:2:400 -out=Rv3911_645_MTB_TETR.unique.QC