<<include colors_fonts_patterns.conf>>

<<include etc/housekeeping.conf>>

<<include Schizosaccharomyces_pombe.ASM294v2.chrM.ideogram.conf>>
<<include Schizosaccharomyces_pombe.ASM294v2.chrM.ticks.conf>>

<image>
<<include etc/image.conf>>
</image>

karyotype   = Schizosaccharomyces_pombe.ASM294v2.chrM.karyotype

chromosomes_units           = 10
chromosomes_display_default = no
chromosomes                 = chrM

<plots>

type      = histogram
thickness = 2

<plot>
show    = yes
file    = /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/mappability/Schizosaccharomyces_pombe.ASM294v2.36mers.Schizosaccharomyces_pombe.ASM294v2.bowtie.mappability.unique.chrM.wig
z       = 5
max_gap = 0u
fill_under = yes
fill_color = dred
color   = dred
min     = 0
max     = 36
r0      = 0.88r
r1      = 0.98r
</plot>

<plot>
type = tile
file = Schizosaccharomyces_pombe.ASM294v2.23.chrM.protein_coding.genes.plus.tile
layers = 6
layers_overflow = hide
margin = 0.2u
thickness = 28
padding = 6
orientation = out
stroke_thickness = 1
stroke_color = black
color = yellow
r0 = 0.80r
r1 = 0.88r
</plot>

<plot>
type = tile
file = Schizosaccharomyces_pombe.ASM294v2.23.chrM.rRNA.genes.plus.tile
layers = 6
layers_overflow = hide
margin = 0.2u
thickness = 36
padding = 6
orientation = out
stroke_thickness = 1
stroke_color = black
color = blue
r0 = 0.84r
r1 = 0.88r
</plot>

<plot>
type = tile
file = Schizosaccharomyces_pombe.ASM294v2.23.chrM.tRNA.genes.plus.tile
layers = 6
layers_overflow = hide
margin = 0.2u
thickness = 36
padding = 6
orientation = out
stroke_thickness = 1
stroke_color = black
color = grey
r0 = 0.84r
r1 = 0.88r
</plot>

<plot>
type = text
file = Schizosaccharomyces_pombe.ASM294v2.23.chrM.rRNA+protein_coding.genes.plus.text
color      = black
label_font = bold
label_size = 36p
label_parallel   = no
padding = 15p
rpadding = 15p
z       = 1
r0 = 1.02r
r1 = 1.22r
</plot>

<plot>
type = text
file = Schizosaccharomyces_pombe.ASM294v2.23.chrM.tRNA.genes.plus.text
color      = black
label_font = bold
label_size = 12p
label_parallel  = no
padding = 2p
rpadding = 2p
z       = 2
r0 = 1.03r
r1 = 1.08r
</plot>


<plot>
show    = yes
file    = 23-Schizosaccharomyces_pombe/Scm3-GFP-ChipSeq-GSM1322114.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.minus.RPM.wig.sign_flipped
z       = 5
max_gap = 0u
orientation = in
fill_under = yes
fill_color = ylorrd-9-seq-7
color   = ylorrd-9-seq-9
min     = 0
max     = 317
r0      = 0.78r
r1      = 0.83r
</plot>


<plot>
show    = yes
file    = 23-Schizosaccharomyces_pombe/Scm3-GFP-ChipSeq-GSM1322114.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.plus.RPM.wig
z       = 5
max_gap = 0u
fill_under = yes
fill_color = ylorrd-9-seq-9
color   = ylorrd-9-seq-7
min     = 0
max     = 253
r0      = 0.83r
r1      = 0.88r
</plot>


<plot>
show    = yes
file    = 23-Schizosaccharomyces_pombe/Scm3-GFP-Input-ChipSeq-GSM1322118.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.minus.RPM.wig.sign_flipped
z       = 5
max_gap = 0u
orientation = in
fill_under = yes
fill_color = greens-9-seq-2
color   = purd-9-seq-5
min     = 0
max     = 911
r0      = 0.68r
r1      = 0.73r
</plot>


<plot>
show    = yes
file    = 23-Schizosaccharomyces_pombe/Scm3-GFP-Input-ChipSeq-GSM1322118.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.plus.RPM.wig
z       = 5
max_gap = 0u
fill_under = yes
fill_color = purd-9-seq-5
color   = greens-9-seq-2
min     = 0
max     = 887
r0      = 0.73r
r1      = 0.78r
</plot>

</plots>
