<<include colors_fonts_patterns.conf>>

<<include etc/housekeeping.conf>>

<<include Candida_glabrata_CBS138.chrM.ideogram.conf>>
<<include Candida_glabrata_CBS138.chrM.ticks.conf>>

<image>
<<include etc/image.conf>>
</image>

karyotype   = Candida_glabrata_CBS138.chrM.karyotype

chromosomes_units           = 10
chromosomes_display_default = no
chromosomes                 = mito

<plots>

type      = histogram
thickness = 2

<plot>
show    = yes
file    = /woldlab/castor/data00/home/georgi/genomes/Candida/Candida_glabrata_CBS138/mappability/Candida_glabrata_CBS138.36mers.Candida_glabrata_CBS138.bowtie.mappability.unique.mito.wig
z       = 5
max_gap = 0u
fill_under = yes
fill_color = dred
color   = dred
min     = 0
max     = 36
r0      = 0.88r
r1      = 0.98r
</plot>



<plot>
show    = yes
file    = 35-Candida_glabrata/Pdr_2_R0-GSM1447362.36mers.mito.unique.minus.RPM.wig.sign_flipped
z       = 5
max_gap = 0u
orientation = in
fill_under = yes
fill_color = ylorrd-9-seq-7
color   = ylorrd-9-seq-9
min     = 0
max     = 29239
r0      = 0.78r
r1      = 0.83r
</plot>


<plot>
show    = yes
file    = 35-Candida_glabrata/Pdr_2_R0-GSM1447362.36mers.mito.unique.plus.RPM.wig
z       = 5
max_gap = 0u
fill_under = yes
fill_color = ylorrd-9-seq-9
color   = ylorrd-9-seq-7
min     = 0
max     = 23391
r0      = 0.83r
r1      = 0.88r
</plot>


<plot>
show    = yes
file    = 35-Candida_glabrata/Pdr_2_AB_CTL-GSM1447360.36mers.mito.unique.minus.RPM.wig.sign_flipped
z       = 5
max_gap = 0u
orientation = in
fill_under = yes
fill_color = greens-9-seq-2
color   = purd-9-seq-5
min     = 0
max     = 6742
r0      = 0.68r
r1      = 0.73r
</plot>


<plot>
show    = yes
file    = 35-Candida_glabrata/Pdr_2_AB_CTL-GSM1447360.36mers.mito.unique.plus.RPM.wig
z       = 5
max_gap = 0u
fill_under = yes
fill_color = purd-9-seq-5
color   = greens-9-seq-2
min     = 0
max     = 8298
r0      = 0.73r
r1      = 0.78r
</plot>

</plots>
