universe=vanilla

environment="ERANGEPATH=/woldlab/loxcyc/data00/alim/commoncode/:CISTEMATIC_ROOT=/woldlab/loxcyc/data00/alim/genome3/:PYTHONPATH=/woldlab/loxcyc/data00/alim/genome3/"

executable=/usr/bin/python

log=python.log
output=python.out
error=python.err

request_cpus = 1
request_memory = 100
request_disk = 0

arguments=/woldlab/castor/data00/home/georgi/code/SAMstats.py Asf1_ChIPseq1-GSM999651.chrM.36mers.unique.bam SAMstats-Asf1_ChIPseq1-GSM999651.chrM.36mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools
queue
arguments=/woldlab/castor/data00/home/georgi/code/SAMstats.py Asf1_ChIPseq2-GSM999652.chrM.36mers.unique.bam SAMstats-Asf1_ChIPseq2-GSM999652.chrM.36mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools
queue
arguments=/woldlab/castor/data00/home/georgi/code/SAMstats.py Mock-GSM999653.chrM.36mers.unique.bam SAMstats-Mock-GSM999653.chrM.36mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools
queue
arguments=/woldlab/castor/data00/home/georgi/code/SAMstats.py Asf1_ChIPseq1-GSM999651.sacCer3.36mers.unique.bam SAMstats-Asf1_ChIPseq1-GSM999651.sacCer3.36mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools
queue
arguments=/woldlab/castor/data00/home/georgi/code/SAMstats.py Asf1_ChIPseq2-GSM999652.sacCer3.36mers.unique.bam SAMstats-Asf1_ChIPseq2-GSM999652.sacCer3.36mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools
queue
arguments=/woldlab/castor/data00/home/georgi/code/SAMstats.py Mock-GSM999653.sacCer3.36mers.unique.bam SAMstats-Mock-GSM999653.sacCer3.36mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Asf1_ChIPseq1-GSM999651.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Asf1_ChIPseq1-GSM999651.chrM.36mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Asf1_ChIPseq2-GSM999652.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Asf1_ChIPseq2-GSM999652.chrM.36mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Mock-GSM999653.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Mock-GSM999653.chrM.36mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Asf1_ChIPseq1-GSM999651.sacCer3.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Asf1_ChIPseq1-GSM999651.sacCer3.36mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Asf1_ChIPseq2-GSM999652.sacCer3.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Asf1_ChIPseq2-GSM999652.sacCer3.36mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Mock-GSM999653.sacCer3.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Mock-GSM999653.sacCer3.36mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Asf1_ChIPseq1-GSM999651.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Asf1_ChIPseq1-GSM999651.chrM.36mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Asf1_ChIPseq2-GSM999652.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Asf1_ChIPseq2-GSM999652.chrM.36mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Mock-GSM999653.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Mock-GSM999653.chrM.36mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Asf1_ChIPseq1-GSM999651.sacCer3.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Asf1_ChIPseq1-GSM999651.sacCer3.36mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Asf1_ChIPseq2-GSM999652.sacCer3.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Asf1_ChIPseq2-GSM999652.sacCer3.36mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Mock-GSM999653.sacCer3.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Mock-GSM999653.sacCer3.36mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Asf1_ChIPseq1-GSM999651.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Asf1_ChIPseq1-GSM999651.chrM.36mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Asf1_ChIPseq2-GSM999652.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Asf1_ChIPseq2-GSM999652.chrM.36mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Mock-GSM999653.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Mock-GSM999653.chrM.36mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Asf1_ChIPseq1-GSM999651.sacCer3.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Asf1_ChIPseq1-GSM999651.sacCer3.36mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Asf1_ChIPseq2-GSM999652.sacCer3.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Asf1_ChIPseq2-GSM999652.sacCer3.36mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Mock-GSM999653.sacCer3.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/sacCer3/sacCer3.chrom.sizes Mock-GSM999653.sacCer3.36mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue