universe=vanilla

environment="ERANGEPATH=/woldlab/loxcyc/data00/alim/commoncode/:CISTEMATIC_ROOT=/woldlab/loxcyc/data00/alim/genome3/:PYTHONPATH=/woldlab/loxcyc/data00/alim/genome3/"

executable=/usr/bin/python

log=python.log
output=python.out
error=python.err

request_cpus = 1
request_memory = 70
request_disk = 0

arguments=/woldlab/castor/data00/home/georgi/code/SAMstats.py Untagged_ChIPSeq-GSM1486228.chrM.25mers.unique.bam SAMstats-Untagged_ChIPSeq-GSM1486228.chrM.25mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools
queue
arguments=/woldlab/castor/data00/home/georgi/code/SAMstats.py Fkh2_ChIPSeq-GSM1486229.chrM.25mers.unique.bam SAMstats-Fkh2_ChIPSeq-GSM1486229.chrM.25mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools
queue
arguments=/woldlab/castor/data00/home/georgi/code/SAMstats.py Sak1_ChIPSeq-GSM1486230.chrM.25mers.unique.bam SAMstats-Sak1_ChIPSeq-GSM1486230.chrM.25mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools
queue
arguments=/woldlab/castor/data00/home/georgi/code/SAMstats.py Sep1_Bort_ChIPSeq-GSM1486231.chrM.25mers.unique.bam SAMstats-Sep1_Bort_ChIPSeq-GSM1486231.chrM.25mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools
queue
arguments=/woldlab/castor/data00/home/georgi/code/SAMstats.py Untagged_ChIPSeq-GSM1486228.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam SAMstats-Untagged_ChIPSeq-GSM1486228.Schizosaccharomyces_pombe.ASM294v2.25mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools
queue
arguments=/woldlab/castor/data00/home/georgi/code/SAMstats.py Fkh2_ChIPSeq-GSM1486229.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam SAMstats-Fkh2_ChIPSeq-GSM1486229.Schizosaccharomyces_pombe.ASM294v2.25mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools
queue
arguments=/woldlab/castor/data00/home/georgi/code/SAMstats.py Sak1_ChIPSeq-GSM1486230.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam SAMstats-Sak1_ChIPSeq-GSM1486230.Schizosaccharomyces_pombe.ASM294v2.25mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools
queue
arguments=/woldlab/castor/data00/home/georgi/code/SAMstats.py Sep1_Bort_ChIPSeq-GSM1486231.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam SAMstats-Sep1_Bort_ChIPSeq-GSM1486231.Schizosaccharomyces_pombe.ASM294v2.25mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Untagged_ChIPSeq-GSM1486228.chrM.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Untagged_ChIPSeq-GSM1486228.chrM.25mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Fkh2_ChIPSeq-GSM1486229.chrM.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Fkh2_ChIPSeq-GSM1486229.chrM.25mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Sak1_ChIPSeq-GSM1486230.chrM.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Sak1_ChIPSeq-GSM1486230.chrM.25mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Sep1_Bort_ChIPSeq-GSM1486231.chrM.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Sep1_Bort_ChIPSeq-GSM1486231.chrM.25mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Untagged_ChIPSeq-GSM1486228.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Untagged_ChIPSeq-GSM1486228.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Fkh2_ChIPSeq-GSM1486229.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Fkh2_ChIPSeq-GSM1486229.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Sak1_ChIPSeq-GSM1486230.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Sak1_ChIPSeq-GSM1486230.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Sep1_Bort_ChIPSeq-GSM1486231.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Sep1_Bort_ChIPSeq-GSM1486231.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Untagged_ChIPSeq-GSM1486228.chrM.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Untagged_ChIPSeq-GSM1486228.chrM.25mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Fkh2_ChIPSeq-GSM1486229.chrM.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Fkh2_ChIPSeq-GSM1486229.chrM.25mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Sak1_ChIPSeq-GSM1486230.chrM.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Sak1_ChIPSeq-GSM1486230.chrM.25mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Sep1_Bort_ChIPSeq-GSM1486231.chrM.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Sep1_Bort_ChIPSeq-GSM1486231.chrM.25mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Untagged_ChIPSeq-GSM1486228.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Untagged_ChIPSeq-GSM1486228.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Fkh2_ChIPSeq-GSM1486229.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Fkh2_ChIPSeq-GSM1486229.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Sak1_ChIPSeq-GSM1486230.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Sak1_ChIPSeq-GSM1486230.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Sep1_Bort_ChIPSeq-GSM1486231.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Sep1_Bort_ChIPSeq-GSM1486231.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Untagged_ChIPSeq-GSM1486228.chrM.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Untagged_ChIPSeq-GSM1486228.chrM.25mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Fkh2_ChIPSeq-GSM1486229.chrM.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Fkh2_ChIPSeq-GSM1486229.chrM.25mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Sak1_ChIPSeq-GSM1486230.chrM.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Sak1_ChIPSeq-GSM1486230.chrM.25mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Sep1_Bort_ChIPSeq-GSM1486231.chrM.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Sep1_Bort_ChIPSeq-GSM1486231.chrM.25mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Untagged_ChIPSeq-GSM1486228.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Untagged_ChIPSeq-GSM1486228.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Fkh2_ChIPSeq-GSM1486229.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Fkh2_ChIPSeq-GSM1486229.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Sak1_ChIPSeq-GSM1486230.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Sak1_ChIPSeq-GSM1486230.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue
arguments=/woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Sep1_Bort_ChIPSeq-GSM1486231.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Sep1_Bort_ChIPSeq-GSM1486231.Schizosaccharomyces_pombe.ASM294v2.25mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM
queue