condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py Control-GSM870204.chrM.36mers.unique.bam SAMstats-Control-GSM870204.chrM.36mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py Med7-GSM870206.chrM.36mers.unique.bam SAMstats-Med7-GSM870206.chrM.36mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py RNA-Polymerase-II-GSM870205.chrM.36mers.unique.bam SAMstats-RNA-Polymerase-II-GSM870205.chrM.36mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py Control-GSM870204.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.bam SAMstats-Control-GSM870204.Schizosaccharomyces_pombe.ASM294v2.36mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py Med7-GSM870206.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.bam SAMstats-Med7-GSM870206.Schizosaccharomyces_pombe.ASM294v2.36mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/SAMstats.py RNA-Polymerase-II-GSM870205.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.bam SAMstats-RNA-Polymerase-II-GSM870205.Schizosaccharomyces_pombe.ASM294v2.36mers.unique -bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes /woldlab/castor/data00/proj/genome/programs/samtools-0.1.8/samtools" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Control-GSM870204.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Control-GSM870204.chrM.36mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Med7-GSM870206.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Med7-GSM870206.chrM.36mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === RNA-Polymerase-II-GSM870205.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes RNA-Polymerase-II-GSM870205.chrM.36mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Control-GSM870204.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Control-GSM870204.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Med7-GSM870206.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Med7-GSM870206.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === RNA-Polymerase-II-GSM870205.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes RNA-Polymerase-II-GSM870205.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.minus.RPM.wig -RPM -stranded - -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Control-GSM870204.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Control-GSM870204.chrM.36mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Med7-GSM870206.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Med7-GSM870206.chrM.36mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === RNA-Polymerase-II-GSM870205.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes RNA-Polymerase-II-GSM870205.chrM.36mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Control-GSM870204.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Control-GSM870204.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Med7-GSM870206.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Med7-GSM870206.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === RNA-Polymerase-II-GSM870205.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes RNA-Polymerase-II-GSM870205.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.plus.RPM.wig -RPM -stranded + -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Control-GSM870204.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Control-GSM870204.chrM.36mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Med7-GSM870206.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Med7-GSM870206.chrM.36mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === RNA-Polymerase-II-GSM870205.chrM.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes RNA-Polymerase-II-GSM870205.chrM.36mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Control-GSM870204.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Control-GSM870204.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === Med7-GSM870206.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes Med7-GSM870206.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &
condor_run "python /woldlab/castor/data00/home/georgi/code/makewigglefromBAM-NH.py === RNA-Polymerase-II-GSM870205.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.bam /woldlab/castor/data00/home/georgi/genomes/Schizosaccharomyces_pombe.ASM294v2/Schizosaccharomyces_pombe.ASM294v2.chrom.sizes RNA-Polymerase-II-GSM870205.Schizosaccharomyces_pombe.ASM294v2.36mers.unique.RPM.wig -RPM -notitle -singlebasepair -mismatchesMD 0 -chr chrM -uniqueBAM" &