# /woldlab/castor/data00/proj/genome/programs/meme-4.6.1/bin/dreme -p 12-organelles-nucleus-merged-PISTILLATA-GFP-AP1-GR-ap1-cal-ChIPseq-GSM940585.36mers.unique-gem.v2.2_GEM_events.100bp.fasta -n None -mink 3 -maxk 8 -e 0.05 -g 100
# ( /woldlab/castor/data00/proj/genome/programs/meme-4.6.1/bin/dreme -m 5 -p 12-organelles-nucleus-merged-PISTILLATA-GFP-AP1-GR-ap1-cal-ChIPseq-GSM940585.36mers.unique-gem.v2.2_GEM_events.100bp.fasta )
#  svn: '.' is not a working copy

MEME version 4.5

ALPHABET= ACGT

strands: + -

Background letter frequencies (from
A 0.316  C 0.183  G 0.184  T 0.318  

# VALUES AFTER ERASING BEST WORD
# WORD RC_WORD 	p 	P 	n 	N   p-value   E-value
BEST ARAGAGR YCTCTYT    761   1809    350   1809 1.4e-050 6.3e-046 6.3e-046 
	AAAGAGA TCTCTTT    392   1809    175   1809 8.9e-024 3.9e-019
	AAAGAGG CCTCTTT    211   1809     85   1809 7.3e-015 3.2e-010
	AGAGAGA TCTCTCT    379   1809    119   1809 1.2e-037 5.4e-033
	AGAGAGG CCTCTCT    132   1809     62   1809 1.3e-007 5.9e-003

MOTIF ARAGAGR 6.3e-046
letter-probability matrix: alength= 4 w= 7 nsites= 1186 E= 6.3e-046
1.000000 0.000000 0.000000 0.000000 
0.505902 0.000000 0.494098 0.000000 
1.000000 0.000000 0.000000 0.000000 
0.000000 0.000000 1.000000 0.000000 
1.000000 0.000000 0.000000 0.000000 
0.000000 0.000000 1.000000 0.000000 
0.722597 0.000000 0.277403 0.000000 

log-odds matrix: alength= 4 w= 7 n= 1186 bayes= 0 E= 6.3e-046
1.657101 -7.763539 -7.771488 -8.561602 
0.675218 -7.763539 1.425729 -8.561602 
1.657101 -7.763539 -7.771488 -8.561602 
-8.556003 -7.763539 2.441616 -8.561602 
1.657101 -7.763539 -7.771488 -8.561602 
-8.556003 -7.763539 2.441616 -8.561602 
1.188831 -7.763539 0.594834 -8.561602 

BEST AAAGDARA TYTHCTTT    697   1809    319   1809 2.7e-045 1.2e-040 7.1e-042 
	AAAGTAGA TCTACTTT     69   1809     30   1809 4.5e-005 1.9e+000
	AAAGTAAA TTTACTTT    101   1809     59   1809 4.3e-004 1.9e+001
	AAAGAAGA TCTTCTTT    180   1809     64   1809 4.1e-015 1.8e-010
	AAAGGAAA TTTCCTTT    203   1809     57   1809 4.6e-022 2.0e-017
	AAAGAAAA TTTTCTTT    269   1809    117   1809 9.5e-017 4.1e-012
	AAAGGAGA TCTCCTTT     64   1809     34   1809 1.4e-003 6.0e+001

MOTIF AAAGDARA 1.2e-040
letter-probability matrix: alength= 4 w= 8 nsites= 909 E= 1.2e-040
1.000000 0.000000 0.000000 0.000000 
1.000000 0.000000 0.000000 0.000000 
1.000000 0.000000 0.000000 0.000000 
0.000000 0.000000 1.000000 0.000000 
0.519252 0.000000 0.294829 0.185919 
1.000000 0.000000 0.000000 0.000000 
0.646865 0.000000 0.353135 0.000000 
1.000000 0.000000 0.000000 0.000000 

log-odds matrix: alength= 4 w= 8 n= 909 bayes= 0 E= 1.2e-040
1.655995 -7.381264 -7.389213 -8.179328 
1.655995 -7.381264 -7.389213 -8.179328 
1.655995 -7.381264 -7.389213 -8.179328 
-8.173728 -7.381264 2.440510 -8.179328 
0.711968 -7.381264 0.682249 -0.769937 
1.655995 -7.381264 -7.389213 -8.179328 
1.028396 -7.381264 0.941704 -8.179328 
1.655995 -7.381264 -7.389213 -8.179328 

BEST CACGTG CACGTG    214   1809     30   1809 6.8e-038 2.9e-033 2.9e-033 
	CACGTG CACGTG    214   1809     30   1809 6.8e-038 2.9e-033

MOTIF CACGTG 2.9e-033
letter-probability matrix: alength= 4 w= 6 nsites= 247 E= 2.9e-033
0.000000 1.000000 0.000000 0.000000 
1.000000 0.000000 0.000000 0.000000 
0.000000 1.000000 0.000000 0.000000 
0.000000 0.000000 1.000000 0.000000 
0.000000 0.000000 0.000000 1.000000 
0.000000 0.000000 1.000000 0.000000 

log-odds matrix: alength= 4 w= 6 n= 247 bayes= 0 E= 2.9e-033
-6.310801 2.435859 -5.526285 -6.316400 
1.643396 -5.518337 -5.526285 -6.316400 
-6.310801 2.435859 -5.526285 -6.316400 
-6.310801 -5.518337 2.427911 -6.316400 
-6.310801 -5.518337 -5.526285 1.637796 
-6.310801 -5.518337 2.427911 -6.316400 

BEST AAAADGG CCHTTTT    566   1809    270   1809 4.2e-032 1.8e-027 2.2e-039 
	AAAAGGG CCCTTTT    172   1809     68   1809 1.4e-012 6.1e-008
	AAAAAGG CCTTTTT    279   1809    151   1809 2.6e-011 1.1e-006
	AAAATGG CCATTTT    253   1809    104   1809 3.1e-017 1.3e-012

MOTIF AAAADGG 1.8e-027
letter-probability matrix: alength= 4 w= 7 nsites= 670 E= 1.8e-027
1.000000 0.000000 0.000000 0.000000 
1.000000 0.000000 0.000000 0.000000 
1.000000 0.000000 0.000000 0.000000 
1.000000 0.000000 0.000000 0.000000 
0.386567 0.000000 0.211940 0.401493 
0.000000 0.000000 1.000000 0.000000 
0.000000 0.000000 1.000000 0.000000 

log-odds matrix: alength= 4 w= 7 n= 670 bayes= 0 E= 1.8e-027
1.654307 -6.943398 -6.951347 -7.741461 
1.654307 -6.943398 -6.951347 -7.741461 
1.654307 -6.943398 -6.951347 -7.741461 
1.654307 -6.943398 -6.951347 -7.741461 
0.286506 -6.943398 0.208525 0.335354 
-7.735862 -6.943398 2.438822 -7.741461 
-7.735862 -6.943398 2.438822 -7.741461 

BEST ATATAT ATATAT    283   1809    104   1809 1.0e-022 4.4e-018 5.6e-018 
	ATATAT ATATAT    283   1809    104   1809 1.0e-022 4.4e-018

MOTIF ATATAT 4.4e-018
letter-probability matrix: alength= 4 w= 6 nsites= 332 E= 4.4e-018
1.000000 0.000000 0.000000 0.000000 
0.000000 0.000000 0.000000 1.000000 
1.000000 0.000000 0.000000 0.000000 
0.000000 0.000000 0.000000 1.000000 
1.000000 0.000000 0.000000 0.000000 
0.000000 0.000000 0.000000 1.000000 

log-odds matrix: alength= 4 w= 6 n= 332 bayes= 0 E= 4.4e-018
1.647804 -5.939111 -5.947059 -6.737174 
-6.731574 -5.939111 -5.947059 1.642204 
1.647804 -5.939111 -5.947059 -6.737174 
-6.731574 -5.939111 -5.947059 1.642204 
1.647804 -5.939111 -5.947059 -6.737174 
-6.731574 -5.939111 -5.947059 1.642204 


# 5 motifs with E-value < 0.05 found.
#elapsed time: 128.02 seconds