# /woldlab/castor/data00/proj/genome/programs/meme-4.6.1/bin/dreme -p 12-organelles-nucleus-merged-APETALA3-GFP-AP1-GR-ap1-cal-ChIPseq-GSM940586.36mers.unique-gem.v2.2_GEM_events.100bp.fasta -n None -mink 3 -maxk 8 -e 0.05 -g 100
# ( /woldlab/castor/data00/proj/genome/programs/meme-4.6.1/bin/dreme -m 5 -p 12-organelles-nucleus-merged-APETALA3-GFP-AP1-GR-ap1-cal-ChIPseq-GSM940586.36mers.unique-gem.v2.2_GEM_events.100bp.fasta )
#  svn: '.' is not a working copy

MEME version 4.5

ALPHABET= ACGT

strands: + -

Background letter frequencies (from
A 0.312  C 0.188  G 0.191  T 0.309  

# VALUES AFTER ERASING BEST WORD
# WORD RC_WORD 	p 	P 	n 	N   p-value   E-value
BEST CTTYCC GGRAAG    659   1498    315   1498 9.5e-042 4.1e-037 4.1e-037 
	CTTTCC GGAAAG    471   1498    211   1498 2.2e-030 9.3e-026
	CTTCCC GGGAAG    226   1498    123   1498 2.5e-009 1.1e-004

MOTIF CTTYCC 4.1e-037
letter-probability matrix: alength= 4 w= 6 nsites= 767 E= 4.1e-037
0.000000 1.000000 0.000000 0.000000 
0.000000 0.000000 0.000000 1.000000 
0.000000 0.000000 0.000000 1.000000 
0.000000 0.307692 0.000000 0.692308 
0.000000 1.000000 0.000000 0.000000 
0.000000 1.000000 0.000000 0.000000 

log-odds matrix: alength= 4 w= 6 n= 767 bayes= 0 E= 4.1e-037
-7.909858 2.402898 -7.202701 -7.894697 
-7.909858 -7.182064 -7.202701 1.690266 
-7.909858 -7.182064 -7.202701 1.690266 
-7.909858 0.706679 -7.202701 1.160586 
-7.909858 2.402898 -7.202701 -7.894697 
-7.909858 2.402898 -7.202701 -7.894697 

BEST CACGTG CACGTG    195   1498     21   1498 3.5e-039 1.5e-034 4.1e-035 
	CACGTG CACGTG    195   1498     21   1498 3.5e-039 1.5e-034

MOTIF CACGTG 1.5e-034
letter-probability matrix: alength= 4 w= 6 nsites= 229 E= 1.5e-034
0.000000 1.000000 0.000000 0.000000 
1.000000 0.000000 0.000000 0.000000 
0.000000 1.000000 0.000000 0.000000 
0.000000 0.000000 1.000000 0.000000 
0.000000 0.000000 0.000000 1.000000 
0.000000 0.000000 1.000000 0.000000 

log-odds matrix: alength= 4 w= 6 n= 229 bayes= 0 E= 1.5e-034
-6.183458 2.389827 -5.476300 -6.168296 
1.662032 -5.455664 -5.476300 -6.168296 
-6.183458 2.389827 -5.476300 -6.168296 
-6.183458 -5.455664 2.369190 -6.168296 
-6.183458 -5.455664 -5.476300 1.677194 
-6.183458 -5.455664 2.369190 -6.168296 

BEST AGAGAGA TCTCTCT    299   1498     88   1498 5.4e-032 2.3e-027 4.1e-028 
	AGAGAGA TCTCTCT    299   1498     88   1498 5.4e-032 2.3e-027

MOTIF AGAGAGA 2.3e-027
letter-probability matrix: alength= 4 w= 7 nsites= 425 E= 2.3e-027
1.000000 0.000000 0.000000 0.000000 
0.000000 0.000000 1.000000 0.000000 
1.000000 0.000000 0.000000 0.000000 
0.000000 0.000000 1.000000 0.000000 
1.000000 0.000000 0.000000 0.000000 
0.000000 0.000000 1.000000 0.000000 
1.000000 0.000000 0.000000 0.000000 

log-odds matrix: alength= 4 w= 7 n= 425 bayes= 0 E= 2.3e-027
1.670604 -6.336311 -6.356948 -7.048943 
-7.064105 -6.336311 2.377761 -7.048943 
1.670604 -6.336311 -6.356948 -7.048943 
-7.064105 -6.336311 2.377761 -7.048943 
1.670604 -6.336311 -6.356948 -7.048943 
-7.064105 -6.336311 2.377761 -7.048943 
1.670604 -6.336311 -6.356948 -7.048943 

BEST AAGAMGA TCKTCTT    314   1498    130   1498 7.8e-022 3.3e-017 6.2e-019 
	AAGACGA TCGTCTT     56   1498     22   1498 6.1e-005 2.6e+000
	AAGAAGA TCTTCTT    270   1498    112   1498 1.5e-018 6.4e-014

MOTIF AAGAMGA 3.3e-017
letter-probability matrix: alength= 4 w= 7 nsites= 376 E= 3.3e-017
1.000000 0.000000 0.000000 0.000000 
1.000000 0.000000 0.000000 0.000000 
0.000000 0.000000 1.000000 0.000000 
1.000000 0.000000 0.000000 0.000000 
0.851064 0.148936 0.000000 0.000000 
0.000000 0.000000 1.000000 0.000000 
1.000000 0.000000 0.000000 0.000000 

log-odds matrix: alength= 4 w= 7 n= 376 bayes= 0 E= 3.3e-017
1.669294 -6.161333 -6.181970 -6.873965 
1.669294 -6.161333 -6.181970 -6.873965 
-6.889127 -6.161333 2.376451 -6.873965 
1.669294 -6.161333 -6.181970 -6.873965 
1.437302 -0.328443 -6.181970 -6.873965 
-6.889127 -6.161333 2.376451 -6.873965 
1.669294 -6.161333 -6.181970 -6.873965 

BEST AWATGG CCATWT    515   1498    286   1498 1.5e-021 6.4e-017 6.5e-019 
	ATATGG CCATAT    188   1498    104   1498 1.3e-007 5.7e-003
	AAATGG CCATTT    380   1498    195   1498 4.1e-018 1.7e-013

MOTIF AWATGG 6.4e-017
letter-probability matrix: alength= 4 w= 6 nsites= 633 E= 6.4e-017
1.000000 0.000000 0.000000 0.000000 
0.687204 0.000000 0.000000 0.312796 
1.000000 0.000000 0.000000 0.000000 
0.000000 0.000000 0.000000 1.000000 
0.000000 0.000000 1.000000 0.000000 
0.000000 0.000000 1.000000 0.000000 

log-odds matrix: alength= 4 w= 6 n= 633 bayes= 0 E= 6.4e-017
1.673918 -6.906627 -6.927264 -7.619259 
1.133763 -6.906627 -6.927264 0.017365 
1.673918 -6.906627 -6.927264 -7.619259 
-7.634421 -6.906627 -6.927264 1.689080 
-7.634421 -6.906627 2.381075 -7.619259 
-7.634421 -6.906627 2.381075 -7.619259 


# 5 motifs with E-value < 0.05 found.
#elapsed time: 107.69 seconds